Masuya Hiroshi, Usuda Daiki, Nakata Hatsumi, Yuhara Naomi, Kurihara Keiko, Namiki Yuri, Iwase Shigeru, Takada Toyoyuki, Tanaka Nobuhiko, Suzuki Kenta, Yamagata Yuki, Kobayashi Norio, Yoshiki Atsushi, Kushida Tatsuya
Integrated Bioresource Information Division, RIKEN BioResource Research Center, 3-1-1 Koyadai, Tsukuba-shi, Ibaraki, 305-0074, Japan.
Experimental Animal Division, BioResource Research Center, RIKEN, Tsukuba, Japan.
Lab Anim Res. 2021 Jan 18;37(1):6. doi: 10.1186/s42826-020-00068-8.
Online databases are crucial infrastructures to facilitate the wide effective and efficient use of mouse mutant resources in life sciences. The number and types of mouse resources have been rapidly growing due to the development of genetic modification technology with associated information of genomic sequence and phenotypes. Therefore, data integration technologies to improve the findability, accessibility, interoperability, and reusability of mouse strain data becomes essential for mouse strain repositories. In 2020, the RIKEN BioResource Research Center released an integrated database of bioresources including, experimental mouse strains, Arabidopsis thaliana as a laboratory plant, cell lines, microorganisms, and genetic materials using Resource Description Framework-related technologies. The integrated database shows multiple advanced features for the dissemination of bioresource information. The current version of our online catalog of mouse strains which functions as a part of the integrated database of bioresources is available from search bars on the page of the Center ( https://brc.riken.jp ) and the Experimental Animal Division ( https://mus.brc.riken.jp/ ) websites. The BioResource Research Center also released a genomic variation database of mouse strains established in Japan and Western Europe, MoG ( https://molossinus.brc.riken.jp/mogplus/ ), and a database for phenotype-phenotype associations across the mouse phenome using data from the International Mouse Phenotyping Platform. In this review, we describe features of current version of databases related to mouse strain resources in RIKEN BioResource Research Center and discuss future views.
在线数据库是促进生命科学中广泛、有效且高效利用小鼠突变资源的关键基础设施。由于基因编辑技术的发展以及相关基因组序列和表型信息的出现,小鼠资源的数量和类型一直在迅速增长。因此,对于小鼠品系储存库而言,提高小鼠品系数据的可发现性、可访问性、互操作性和可重用性的数据集成技术变得至关重要。2020年,日本理化学研究所生物资源研究中心利用资源描述框架相关技术发布了一个生物资源综合数据库,其中包括实验小鼠品系、作为实验植物的拟南芥、细胞系、微生物和遗传材料。该综合数据库展示了生物资源信息传播的多个先进特性。作为生物资源综合数据库一部分的我们当前版本的小鼠品系在线目录,可通过该中心页面(https://brc.riken.jp )和实验动物部门页面(https://mus.brc.riken.jp/ )网站上的搜索栏获取。生物资源研究中心还发布了一个日本和西欧建立的小鼠品系基因组变异数据库MoG(https://molossinus.brc.riken.jp/mogplus/ ),以及一个使用国际小鼠表型分析平台数据的小鼠表型组跨表型关联数据库。在这篇综述中,我们描述了理化学研究所生物资源研究中心当前版本的与小鼠品系资源相关数据库的特性,并讨论了未来展望。