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豆科一种观赏植物的完整叶绿体基因组特征分析

Characterization of the complete chloroplast genome of (Leguminosae), an ornamental plant.

作者信息

Zhao Xueyan, Wang Fangyuan, Zhang Ruirui, Li Yan

机构信息

Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), Xi'an, China.

School of Pharmacy, Shaanxi Institute of International Trade and Commerce, Xianyang, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 2;5(3):2638-2639. doi: 10.1080/23802359.2020.1782785.

DOI:10.1080/23802359.2020.1782785
PMID:33457889
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782358/
Abstract

is an important flowering, ornamental plant. The extracts showed antioxidant activity and antibacterial properties. In addition, can be used as a model woody plants. In the present study, the complete chloroplast genome was sequenced. The result showed that the length of circular chloroplast genome was 162,744 bp, containing a large single-copy region of 91,176 bp, a small single-copy region of 18,264 bp, and two inverted repeat regions of 26,652 bp. The chloroplast genome contained 128 genes, including 83 protein-coding, eight rRNA, and 37 tRNA genes. Phylogenetic tree analysis showed that has closely relationship with , and .

摘要

是一种重要的开花观赏植物。提取物具有抗氧化活性和抗菌特性。此外,可作为木本植物模型。在本研究中,对完整的叶绿体基因组进行了测序。结果表明,环状叶绿体基因组长度为162,744 bp,包含一个91,176 bp的大单拷贝区域、一个18,264 bp的小单拷贝区域和两个26,652 bp的反向重复区域。叶绿体基因组包含128个基因,包括83个蛋白质编码基因、8个rRNA基因和37个tRNA基因。系统发育树分析表明,与 、 和 关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e82a/7782358/78133bb7a7d8/TMDN_A_1782785_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e82a/7782358/78133bb7a7d8/TMDN_A_1782785_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e82a/7782358/78133bb7a7d8/TMDN_A_1782785_F0001_B.jpg

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本文引用的文献

1
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.MEGA6:分子进化遗传学分析版本 6.0。
Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
2
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
3
OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.
细胞器基因组绘图软件--一套用于生成质体和线粒体基因组物理图谱以及可视化表达数据集的工具。
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W575-81. doi: 10.1093/nar/gkt289. Epub 2013 Apr 22.