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唇形科(某植物)的完整叶绿体基因组序列

Complete chloroplast genome sequence of (Labiatae).

作者信息

Wang Mingcheng, Zhao Qi, Jiang Dechun, Wang Zhiqiang

机构信息

Institute for Advanced Study, Chengdu University, Chengdu, China.

CAS Key laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 7;5(3):2675-2676. doi: 10.1080/23802359.2020.1787263.

Abstract

The complete chloroplast genome of was reconstructed by reference-based assembly using Illumina paired-end data. The assembled plastome is 150,599 base pairs (bp) in length, including a pair of inverted repeat regions (IRs) of 25,654 bp each, a large single-copy region (LSC) of 81,701 bp and a small single-copy region (SSC) of 17,590 bp. A total of 131 genes were predicted from the chloroplast genome, including 86 protein coding genes, 37 tRNA genes and 8 rRNA genes. The overall GC content of chloroplast genome was 38.5%. Phylogenetic analysis with several reported chloroplast genomes showed that is closely clustered with . The complete chloroplast genome of provides new insight into Labiatae evolutionary and genomic studies.

摘要

通过使用Illumina双端数据进行基于参考的组装,重建了[物种名称]的完整叶绿体基因组。组装后的质体基因组长度为150,599个碱基对(bp),包括两个长度均为25,654 bp的反向重复区域(IRs)、一个81,701 bp的大单拷贝区域(LSC)和一个17,590 bp的小单拷贝区域(SSC)。从叶绿体基因组中总共预测出131个基因,包括86个蛋白质编码基因、37个tRNA基因和8个rRNA基因。[物种名称]叶绿体基因组的总体GC含量为38.5%。与几个已报道的叶绿体基因组进行的系统发育分析表明,[物种名称]与[另一物种名称]紧密聚类。[物种名称]的完整叶绿体基因组为唇形科的进化和基因组研究提供了新的见解。

需注意,原文中部分物种名称缺失,我用[物种名称]进行了标注。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/908a/7782854/a9271c8785d6/TMDN_A_1787263_F0001_C.jpg

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