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多季开花杂交品种‘百日花’的完整叶绿体基因组

The complete chloroplast genome of 'Bairihua', a hybrid variety with multi season flowering.

作者信息

Li Wen-Qing, Lu Yi-Zeng, Xie Xiao-Man, Han Yi, Wang Ning, Sun Tao, Liu Li-Jiang, Wang Yan, Zhuang Zhen-Jie, Gao Guang-Chen, Liu Tao, Zhao Li-Jun

机构信息

Shandong Provincial Center of Forest Tree Germplasm Resources, Jinan, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 11;5(3):2760-2762. doi: 10.1080/23802359.2020.1788445.

DOI:10.1080/23802359.2020.1788445
PMID:33457939
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782214/
Abstract

The complete chloroplast genome of 'Bairihua' a hybrid variety with multi season flowering obtained from hybrid progeny of Luoqiu Sihao' ( '01' ×  'Changguo Qiu') and f. was first sequenced with the Illumina HiSeq 2000 platform. Which was 158,210 bp in length with a typical quadruple structure and contained a large single copy (LSC: 84,928 bp) region and a small single copy (SSC: 12,664 bp) region that were separated by a pair of inverted repeats (IRa, b: 30,309 bp) region. The GC content of the whole chloroplast genome is 38.1%. A total of 130 genes was annotated in the complete chloroplast genome, including 85 protein-coding genes, 37 tRNA genes and 8rRNA genes. ML phylogenetic analysis by comparing with 39 chloroplast genomes of the Bignoniaceae indicated that 'Bairihua' was close to .

摘要

‘百日花’是通过‘罗球丝号’(‘01’ב长果秋’)杂交后代获得的多季开花杂交品种,其完整叶绿体基因组首次采用Illumina HiSeq 2000平台进行测序。其长度为158,210 bp,具有典型的四重结构,包含一个大单拷贝(LSC:84,928 bp)区域和一个小单拷贝(SSC:12,664 bp)区域,这两个区域被一对反向重复序列(IRa、b:30,309 bp)区域隔开。整个叶绿体基因组的GC含量为38.1%。在完整的叶绿体基因组中总共注释了130个基因,包括85个蛋白质编码基因、37个tRNA基因和8个rRNA基因。通过与紫葳科39个叶绿体基因组进行比较的ML系统发育分析表明,‘百日花’与……关系密切。

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本文引用的文献

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Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
2
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
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EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.
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Front Genet. 2022 Mar 16;13:845619. doi: 10.3389/fgene.2022.845619. eCollection 2022.
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