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(沃德)恩格尔曼(紫葳科)的完整叶绿体基因组。

The complete chloroplast genome of (Warder) Engelmann (Bignoniaceae).

作者信息

Ma Qing-Guo, Zhang Jian-Guo, Zhang Jun-Pei

机构信息

State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.

出版信息

Mitochondrial DNA B Resour. 2020 May 14;5(3):2089-2090. doi: 10.1080/23802359.2020.1765213.

DOI:10.1080/23802359.2020.1765213
PMID:33457754
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782859/
Abstract

(Warder) Engelm. is a precious tree widely used as a large ornamental shade tree. In this study, the complete chloroplast genome was assembled from Illumina sequencing data. The completed plastome was 158,239 bp in length, including a large single copy (LSC) region of 85,036 bp, a small single copy (SSC) region of 12,639 bp, and a pair of inverted repeat (IR) regions of 30,282 bp. The overall GC content of the genome was 38.09%, and the corresponding values of the LSC, SSC and IR regions were 36.44%, 33.57%, and 41.35%, respectively. A total of 129 genes were annotated, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis was carried out based on complete plastome sequences of and 11 other species from Bignoniaceae family. The newly characterized complete chloroplast genome will provide essential data for further studies of .

摘要

(沃德)恩格尔木是一种珍贵的树种,广泛用作大型观赏遮荫树。在本研究中,从Illumina测序数据组装了完整的叶绿体基因组。完整的质体基因组长度为158,239 bp,包括一个85,036 bp的大单拷贝(LSC)区域、一个12,639 bp的小单拷贝(SSC)区域和一对30,282 bp的反向重复(IR)区域。基因组的总体GC含量为38.09%,LSC、SSC和IR区域的相应值分别为36.44%、33.57%和41.35%。总共注释了129个基因,包括83个蛋白质编码基因、38个tRNA基因和8个rRNA基因。基于紫葳科的 和其他11个物种的完整质体基因组序列进行了系统发育分析。新表征的完整叶绿体基因组将为 的进一步研究提供重要数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bbc/7782859/75219b2add53/TMDN_A_1765213_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bbc/7782859/75219b2add53/TMDN_A_1765213_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bbc/7782859/75219b2add53/TMDN_A_1765213_F0001_B.jpg

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本文引用的文献

1
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
2
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
3
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具:整合搜索与上下文以分析转运RNA基因
紫葳科某种植物的完整叶绿体基因组序列。 (这里的“f.”指代不明,推测是某种紫葳科植物的变种或特定分类单元,但由于信息不完整只能按这种模糊方式翻译)
Mitochondrial DNA B Resour. 2020 Sep 29;5(3):3427-3429. doi: 10.1080/23802359.2020.1823267.
4
Characterization of the first chloroplast genome of (Bignoniaceae).紫葳科(Bignoniaceae)首个叶绿体基因组的特征分析
Mitochondrial DNA B Resour. 2020 Jul 23;5(3):2954-2956. doi: 10.1080/23802359.2020.1791003.
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
4
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
5
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
6
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒:使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.