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(海参科,枝手目)的完整线粒体基因组。

The complete mitochondrial genome of (Cucumariidae, Dendrochirotida).

作者信息

Wang Yan, Zeng Ling, Wen Jing, Li Xuyan, Huang Yafen, Sun Yulin, Zhao Juan

机构信息

Department of Scientific Research, Lingnan Normal University, Zhanjiang, China.

Department of Chemistry, Lingnan Normal University, Zhanjiang, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 14;5(3):2805-2806. doi: 10.1080/23802359.2020.1788455.

DOI:10.1080/23802359.2020.1788455
PMID:33457954
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782155/
Abstract

The complete mitochondrial genome of was obtained and described in this study. This complete mitochondrial genome is 15,752 bp in length and consists of 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. Except ND6 and 5 tRNAs, the others were encoded by the heavy strand. The overall base composition of the heavy-strand was 38.65% A, 12.09% G, 24.31% C, and 24.95% T, with a high A + T content of 63.6%. The phylogenetic analysis suggested that was closest to . The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Holothuroidea.

摘要

本研究获得并描述了[物种名称]的完整线粒体基因组。该完整线粒体基因组长度为15,752 bp,由13个蛋白质编码基因、2个核糖体RNA基因和22个转移RNA基因组成。除ND6和5个tRNA外,其他基因均由重链编码。重链的总体碱基组成为38.65%A、12.09%G、24.31%C和24.95%T,A+T含量较高,为63.6%。系统发育分析表明,[物种名称]与[另一物种名称]关系最近。新描述的线粒体基因组可能为海参纲的系统发育分析提供有价值的数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5cf/7782155/5608aa90eff3/TMDN_A_1788455_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5cf/7782155/5608aa90eff3/TMDN_A_1788455_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5cf/7782155/5608aa90eff3/TMDN_A_1788455_F0001_B.jpg

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本文引用的文献

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tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具:整合搜索与上下文以分析转运RNA基因
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
2
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.