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(十足目:短尾亚目:黎明蟹科)的线粒体全基因组及系统发育分析

The complete mitochondrial genome and phylogenetic analysis of (Decapoda: Brachyura: Matutidae).

作者信息

Lin Fan, Tan Huaqiang, Fazhan Hanafiah, Xie Zhuofang, Guan Mengyun, Shi Xi, Ma Hongyu

机构信息

Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, China.

出版信息

Mitochondrial DNA B Resour. 2018 Feb 7;3(1):157-158. doi: 10.1080/23802359.2018.1437802.

DOI:10.1080/23802359.2018.1437802
PMID:33474103
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800499/
Abstract

The complete mitochondrial genome of was obtained using long and conventional PCR method. The circular genome was 15,760 bp in length, consisting of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a control region. Of the 37 genes, 23 were encoded by the heavy strand, while the others were encoded by the light strand. The genome composition with A + T bias (70.82%) and gene arrangement were largely identical to those observed in most arthropods, such as the mud crab (). The phylogenetic analysis suggested that was closest to The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Matutidae.

摘要

使用长片段PCR和常规PCR方法获得了[物种名称]的完整线粒体基因组。该环状基因组长度为15,760 bp,由13个蛋白质编码基因、22个转运RNA基因、2个核糖体RNA基因和一个控制区组成。在这37个基因中,23个由重链编码,其余由轻链编码。其基因组组成具有A+T偏好性(70.82%),基因排列与大多数节肢动物(如泥蟹[泥蟹物种名称])中观察到的情况基本相同。系统发育分析表明,[物种名称]与[相近物种名称]关系最近。新描述的线粒体基因组可能为馒头蟹科的系统发育分析提供有价值的数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d79/7800499/117697de6adf/TMDN_A_1437802_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d79/7800499/117697de6adf/TMDN_A_1437802_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d79/7800499/117697de6adf/TMDN_A_1437802_F0001_B.jpg

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Mitochondrial DNA B Resour. 2018 Mar 27;3(1):397-398. doi: 10.1080/23802359.2018.1456374.

本文引用的文献

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First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics.中华绒螯蟹线粒体基因组首次测序:系统发育基因组学与群体遗传学意义
Sci Rep. 2015 Jul 30;5:11524. doi: 10.1038/srep11524.
2
The complete mitochondrial genome sequence and gene organization of the mud crab (Scylla paramamosain) with phylogenetic consideration.泥蟹(Scylla paramamosain)完整线粒体基因组序列与基因组织及其系统发育分析。
Gene. 2013 Apr 25;519(1):120-7. doi: 10.1016/j.gene.2013.01.028. Epub 2013 Feb 4.
3
Complete mitochondrial genome of the Asian paddle crab Charybdis japonica (Crustacea: Decapoda: Portunidae): gene rearrangement of the marine brachyurans and phylogenetic considerations of the decapods.
亚洲蜉蝣蟹 Charybdis japonica 的完整线粒体基因组:海洋短尾类的基因重排和十足目动物的系统发育分析。
Mol Biol Rep. 2010 Jun;37(5):2559-69. doi: 10.1007/s11033-009-9773-2. Epub 2009 Aug 28.