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紫葳科(Bignoniaceae)首个叶绿体基因组的特征分析

Characterization of the first chloroplast genome of (Bignoniaceae).

作者信息

Fonseca Luiz Henrique M, Lohmann Lúcia G

机构信息

Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 23;5(3):2954-2956. doi: 10.1080/23802359.2020.1791003.

DOI:10.1080/23802359.2020.1791003
PMID:33458015
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782154/
Abstract

The chloroplast genome of is described and characterized here. This species is endemic to the Chaco and the first species of to have its organelle genome sequenced, providing a genomic resource for phylogenetic inferences. The plastome of is 158,454 bp in length, with a large single-copy of 85,406 bp, a small single-copy of 12,785 bp, and inverted repeats of 30,116 bp each. It contains 131 genes, with 86 protein-coding genes, 37 tRNA, and 8 rRNA. Overall, the GC content is 38.2%. The plastome resembles the structural organization of plastomes commonly found in flowering plants, including those of other genera of Bignoniaceae. A phylogenetic analysis combining a subset of Bignoniaceae plastomes confirms the placement of within the alliance with maximum support.

摘要

本文描述并表征了[物种名称]的叶绿体基因组。该物种是查科地区特有的,也是[所属类别]中首个对其细胞器基因组进行测序的物种,为系统发育推断提供了基因组资源。[物种名称]的质体基因组长度为158,454 bp,其中大单拷贝区为85,406 bp,小单拷贝区为12,785 bp,反向重复序列各为30,116 bp。它包含131个基因,其中86个蛋白质编码基因、37个tRNA和8个rRNA。总体而言,GC含量为38.2%。[物种名称]的质体基因组类似于开花植物中常见的质体基因组结构组织,包括紫葳科其他属的质体基因组。结合紫葳科质体基因组子集进行的系统发育分析以最大支持度证实了[物种名称]在[联盟名称]内的位置。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25e4/7782154/7dcfb136f963/TMDN_A_1791003_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25e4/7782154/7dcfb136f963/TMDN_A_1791003_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25e4/7782154/7dcfb136f963/TMDN_A_1791003_F0001_C.jpg

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本文引用的文献

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2
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Combining high-throughput sequencing and targeted loci data to infer the phylogeny of the "Adenocalymma-Neojobertia" clade (Bignonieae, Bignoniaceae).
结合高通量测序和靶向基因座数据推断“腺萼藤属-新节苣苔属”(紫葳科,硬骨凌霄族)的系统发育关系。
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Plastome Rearrangements in the "" Clade (Bignonieae, Bignoniaceae) and Its Phylogenetic Implications.“ ”分支(紫葳科,紫葳族)中的质体基因组重排及其系统发育意义 。 需注意,原文中“ ”处似乎有缺失内容。
Front Plant Sci. 2017 Nov 1;8:1875. doi: 10.3389/fpls.2017.01875. eCollection 2017.
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