Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA.
Children's Mercy Hospital and Clinics, Kansas City, MO 64108, USA.
Aging (Albany NY). 2021 Jan 19;13(2):1742-1764. doi: 10.18632/aging.202544.
Fetal perturbations in DNA methylation during lung development may reveal insights into the enduring impacts on adult lung health and disease during aging that have not been explored altogether before. We studied the association between genome-wide DNA-methylation and post-conception age in fetal-lung (n=78, 42 exposed to in-utero-smoke (IUS)) tissue and chronological age in adult-lung tissue (n=160, 114 with Chronic Obstructive Pulmonary Disease) using multi-variate linear regression models with covariate adjustment and tested for effect modification by phenotypes. Overlapping age-associations were evaluated for functional and tissue-specific enrichment using the Genotype-Tissue-Expression (GTEx) project. We identified 244 age-associated differentially methylated positions and 878 regions overlapping between fetal and adult-lung tissues. Hyper-methylated CpGs (96%) were enriched in transcription factor activity (FDR adjusted P=2x10) and implicated in developmental processes including embryonic organ morphogenesis, neurogenesis and growth delay. Hypo-methylated CpGs (2%) were enriched in oxido-reductase activity and VEGFA-VEGFR2 Signaling. Twenty-one age-by-sex and eleven age-by-pack-years interactions were statistically significant (FDR<0.05) in adult-lung tissue. DNA methylation in transcription factors during development in fetal lung recapitulates in adult-lung tissue with aging. These findings reveal molecular mechanisms and pathways that may link disrupted development in early-life and age-associated lung diseases.
胎儿在肺发育过程中 DNA 甲基化的干扰可能揭示了以前尚未完全探索的在衰老过程中对成人肺部健康和疾病的持久影响。我们使用多变量线性回归模型,在有条件调整的情况下,研究了全基因组 DNA 甲基化与胎儿肺部(n=78,42 例暴露于子宫内吸烟(IUS))组织的受孕后年龄和成人肺部组织(n=160,114 例慢性阻塞性肺疾病)的时间年龄之间的关联,并通过表型测试了效应修饰。使用基因型-组织-表达(GTEx)项目,评估了重叠年龄相关性的功能和组织特异性富集。我们在胎儿和成人肺部组织之间确定了 244 个年龄相关的差异甲基化位置和 878 个重叠区域。高甲基化 CpG(96%)富集在转录因子活性(FDR 调整 P=2x10)中,涉及发育过程,包括胚胎器官形态发生、神经发生和生长延迟。低甲基化 CpG(2%)富集在氧化还原酶活性和 VEGFA-VEGFR2 信号通路中。在成人肺部组织中,有 21 个年龄-性别和 11 个年龄-吸烟年数的相互作用具有统计学意义(FDR<0.05)。胎儿肺部发育过程中的转录因子 DNA 甲基化在衰老过程中在成人肺部组织中重现。这些发现揭示了可能将生命早期发育中断与年龄相关的肺部疾病联系起来的分子机制和途径。