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(鲈形目:南极鱼科)线粒体全基因组序列及基因组织,并进行系统发育分析

The complete mitochondrial genome sequence and gene organization of (Perciformes: Nototheniidae) with phylogenetic consideration.

作者信息

Song Wei, Li Lingzhi, Huang Hongliang, Zhao Mengdi, Jiang Keji, Zhang Fengying, Zhao Ming, Chen Xuezhong, Ma Lingbo

机构信息

Key Laboratory of East China Sea and Oceanic Fishery Resources Exploitation and Utilization, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China.

College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China.

出版信息

Mitochondrial DNA B Resour. 2016 Feb 1;1(1):50-51. doi: 10.1080/23802359.2015.1137818.

DOI:10.1080/23802359.2015.1137818
PMID:33473404
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800238/
Abstract

In this study, the complete mitochondrial DNA sequence was obtained from . The full length of mitogenome was 16 018 bp, including 20 transfer RNA genes, a 16S ribosomal RNA genes and an incomplete 12S rRNA, 12 protein-coding genes and an incomplete ND6 protein-coding gene, and 2 non-coding regions: control region (D-loop) and origin of light-strand (L-strand) replication (OL). Most genes were located on the heavy-strand (H-strand), while ND6 and seven tRNA genes were located on the L-strand. 's mitogenome was comprised of 24.52% for A, 25.44% for C, 20.38% for G and 29.66% for T, with a higher A + T content (54.18%). From the NJ phylogenetic tree, it revealed that 's was genetically closest to species among seven species within suborder Notothenioidei. This study could lay the foundation for the future studies in species identification, taxonomic status, molecular systematics, stock evaluation and conservation genetics for 's.

摘要

在本研究中,从……获得了完整的线粒体DNA序列。线粒体基因组全长16018 bp,包括20个转运RNA基因、1个16S核糖体RNA基因和1个不完整的12S rRNA、12个蛋白质编码基因和1个不完整的ND6蛋白质编码基因,以及2个非编码区:控制区(D-loop)和轻链(L-strand)复制起点(OL)。大多数基因位于重链(H-strand)上,而ND6和7个tRNA基因位于轻链上。……的线粒体基因组中,A占24.52%,C占25.44%,G占20.38%,T占29.66%,A+T含量较高(54.18%)。从邻接系统发育树可知,在南极鱼亚目七个物种中,……与……在遗传上最为接近。本研究可为……的物种鉴定、分类地位、分子系统学、种群评估和保护遗传学的未来研究奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60bf/7800238/0636c4f112d7/TMDN_A_1137818_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60bf/7800238/0636c4f112d7/TMDN_A_1137818_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60bf/7800238/0636c4f112d7/TMDN_A_1137818_F0001_B.jpg

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本文引用的文献

1
ND6 gene "lost" and found: evolution of mitochondrial gene rearrangement in Antarctic notothenioids.ND6 基因“丢失”又“找回”:南极鳕鱼线粒体基因重排的演化。
Mol Biol Evol. 2010 Jun;27(6):1391-403. doi: 10.1093/molbev/msq026. Epub 2010 Jan 27.
2
Temperature tolerance of some Antarctic fishes.一些南极鱼类的温度耐受性
Science. 1967 Apr 14;156(3772):257-8. doi: 10.1126/science.156.3772.257.
南极吸虫鱼类中独特的线粒体基因倒位:一个警示故事。
J Hered. 2022 Jul 23;113(4):414-420. doi: 10.1093/jhered/esac028.