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(有鳞目:游蛇科)线粒体基因组的测序与分析

Sequencing and analysis of the mitochondrial genome of (Squamata: Colubridae).

作者信息

Lele Abhimanyu, Rand Matthew S, Zweifel Stephan G

机构信息

Department of Biology, Carleton College, Northfield, MN, USA.

出版信息

Mitochondrial DNA B Resour. 2016 Jul 10;1(1):483-484. doi: 10.1080/23802359.2016.1192497.

DOI:10.1080/23802359.2016.1192497
PMID:33473529
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799706/
Abstract

The complete DNA sequence of the mitochondrial genome of the bullsnake ( sayi) is presented and analyzed in this study. The genome is 17,193 bp in length, and contains 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes and 2 control regions. The overall base composition of the H-strand is A (34.5%), T (26.2%), C (25.8%) and G (12.7%). The gene order and orientation of the mitogenome is consistent with other sequenced genomes from colubrid snakes. Phylogenetic analyses using the ML, NJ and MP methods for a set of colubrids, including every sequenced genus within the sub-family Colubrinae, produced identical trees. We show that is most closely related to the American ratsnake genus

摘要

本研究展示并分析了牛蛇(Sayi)线粒体基因组的完整DNA序列。该基因组长度为17,193 bp,包含22个转移RNA基因、2个核糖体RNA基因、13个蛋白质编码基因和2个控制区。重链的总体碱基组成为A(34.5%)、T(26.2%)、C(25.8%)和G(12.7%)。有鳞目蛇类线粒体基因组的基因顺序和方向与其他已测序的基因组一致。使用最大似然法(ML)、邻接法(NJ)和最大简约法(MP)对一组有鳞目蛇类进行系统发育分析,包括游蛇亚科内每个已测序的属,得到了相同的树状图。我们发现 与美洲鼠蛇属关系最为密切。

注

原文中“ We show that is most closely related to the American ratsnake genus”这里的“ ”部分缺失具体内容。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1210/7799706/7d4be7db5ec2/TMDN_A_1192497_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1210/7799706/7d4be7db5ec2/TMDN_A_1192497_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1210/7799706/7d4be7db5ec2/TMDN_A_1192497_F0001_B.jpg

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本文引用的文献

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2
Sequencing and analysis of the complete mitochondrial genome of Elaphe davidi (Squamata: Colubridae).王锦蛇(有鳞目:游蛇科)线粒体全基因组的测序与分析
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2383-4. doi: 10.3109/19401736.2015.1028041. Epub 2015 Mar 25.
3
The complete mitochondrial genome of Elaphe bimaculata (Reptilia, Serpentes, Colubridae).
双斑锦蛇(爬行纲,有鳞目,游蛇科)的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):1285-6. doi: 10.3109/19401736.2014.945558. Epub 2014 Aug 4.
4
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.MEGA6:分子进化遗传学分析版本 6.0。
Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
5
The complete mitochondrial genome of the Sichuan hot-spring keel-back (Thermophis zhaoermii; Serpentes: Colubridae) and a mitogenomic phylogeny of the snakes.四川温泉链蛇(温泉链蛇;有鳞目:游蛇科)的完整线粒体基因组及蛇类的线粒体基因组系统发育研究
Mitochondrial DNA. 2010 Feb;21(1):8-18. doi: 10.3109/19401730903505867.
6
Complete mitochondrial DNA sequences of six snakes: phylogenetic relationships and molecular evolution of genomic features.六种蛇的完整线粒体DNA序列:系统发育关系和基因组特征的分子进化
J Mol Evol. 2005 Jul;61(1):12-22. doi: 10.1007/s00239-004-0190-9. Epub 2005 Jun 29.