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红树鳉(鲤齿目,溪鳉科)的完整线粒体基因组

Complete mitochondrial genome of the mangrove killifish (Cyprinodontiformes, Rivulidae).

作者信息

Kim Hui-Su, Hwang Dae-Sik, Hagiwara Atsushi, Sakakura Yoshitaka, Lee Jae-Seong

机构信息

Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea.

Graduate School of Fisheries and Environmental Sciences, Nagasaki University, Nagasaki, Japan.

出版信息

Mitochondrial DNA B Resour. 2016 Jul 23;1(1):540-541. doi: 10.1080/23802359.2016.1197075.

DOI:10.1080/23802359.2016.1197075
PMID:33473549
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800439/
Abstract

The complete mitochondrial genome was sequenced from the mangrove killifish (). The genome sequence was 17,487 bp in size, and the gene order and contents were identical with those of the congeneric species () in the genus with emphasis on the second control region (795 bp). Of 13 protein-coding genes (PGCs), 5 genes (, , , , and ) had incomplete stop codons as shown in . Furthermore, the stop codon of gene was AGG, while the start codon of gene was GTG. The base composition of mitogenome showed an anti-G bias (13.45% and 8.19%) on the second and third position of the protein-coding genes (PCGs), respectively.

摘要

对红树鳉的完整线粒体基因组进行了测序。基因组序列大小为17,487 bp,基因顺序和内容与同属的同属物种相同,重点是第二个控制区(795 bp)。在13个蛋白质编码基因(PGCs)中,有5个基因(,,,,和)具有不完整的终止密码子,如所示。此外,基因的终止密码子为AGG,而基因的起始密码子为GTG。线粒体基因组的碱基组成在蛋白质编码基因(PCGs)的第二位和第三位分别显示出抗G偏向(13.45%和8.19%)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80f2/7800439/a3a620e7c7f2/TMDN_A_1197075_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80f2/7800439/a3a620e7c7f2/TMDN_A_1197075_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80f2/7800439/a3a620e7c7f2/TMDN_A_1197075_F0001_C.jpg

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本文引用的文献

1
A Genetic Map for the Only Self-Fertilizing Vertebrate.唯一能自体受精的脊椎动物的遗传图谱。
G3 (Bethesda). 2016 Apr 7;6(4):1095-106. doi: 10.1534/g3.115.022699.
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Complete mitochondrial genome of a self-fertilizing fish Kryptolebias marmoratus (Cyprinodontiformes, Rivulidae) from Florida.来自佛罗里达州的自体受精鱼类——珠鳉(鲤齿目,溪鳉科)的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Mar;28(2):244-245. doi: 10.3109/19401736.2015.1115861. Epub 2015 Dec 29.
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