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岩藻(墨角藻目,褐藻纲)的完整线粒体基因组。

The complete mitogenome of the rockweed (Fucaceae, Phaeophyceae).

作者信息

Hughey Jeffery R, Gabrielson Paul W

机构信息

Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA.

Biology Department and Herbarium, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

出版信息

Mitochondrial DNA B Resour. 2017 Apr 7;2(1):203-204. doi: 10.1080/23802359.2017.1310604.

DOI:10.1080/23802359.2017.1310604
PMID:33473768
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799463/
Abstract

The rockweed is a one of the most common intertidal seaweeds in the northern hemisphere. The systematics of however remains open to discussion. Here, we contribute to the bioinformatics and systematics of by deciphering its complete mitogenome. The mitogenome is 36,400 bp in length, contains 67 genes, and has a gene content, organization, and sequence that are similar to the generitype, . These data support the continued recognition of as a polymorphic entity with a broad distribution and high degree of ecological diversity.

摘要

墨角藻是北半球最常见的潮间带海藻之一。然而,其分类学仍有待讨论。在此,我们通过解析其完整的线粒体基因组,为墨角藻的生物信息学和分类学做出贡献。墨角藻的线粒体基因组长度为36,400 bp,包含67个基因,其基因内容、组织和序列与模式种相似。这些数据支持将墨角藻继续认定为一个具有广泛分布和高度生态多样性的多态实体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9377/7799463/6cba83f2621a/TMDN_A_1310604_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9377/7799463/6cba83f2621a/TMDN_A_1310604_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9377/7799463/6cba83f2621a/TMDN_A_1310604_F0001_B.jpg

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本文引用的文献

1
Evolution of the Northern Rockweed, Fucus distichus, in a Regime of Glacial Cycling: Implications for Benthic Algal Phylogenetics.北方墨角藻(Fucus distichus)在冰川循环模式下的演化:对底栖藻类系统发育学的启示
PLoS One. 2015 Dec 2;10(12):e0143795. doi: 10.1371/journal.pone.0143795. eCollection 2015.
2
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
3
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks.
T-REX:一个用于推断、验证和可视化系统发育树和网络的网络服务器。
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W573-9. doi: 10.1093/nar/gks485. Epub 2012 Jun 6.
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Phylogeny.fr: robust phylogenetic analysis for the non-specialist.Phylogeny.fr:面向非专业人士的强大系统发育分析工具。
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. doi: 10.1093/nar/gkn180. Epub 2008 Apr 19.
5
A mtDNA-based phylogeny of the brown algal genus Fucus (Heterokontophyta; Phaeophyta).基于线粒体DNA的墨角藻属(褐藻纲;褐藻门)系统发育研究
Mol Phylogenet Evol. 2006 Apr;39(1):209-22. doi: 10.1016/j.ympev.2006.01.019. Epub 2006 Feb 21.
6
Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis.三种褐藻(不等鞭毛类:褐藻纲)二叉网地藻、墨角藻和绿酸藻的完整线粒体基因组。
Curr Genet. 2006 Jan;49(1):47-58. doi: 10.1007/s00294-005-0031-4. Epub 2005 Nov 30.