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.的完整叶绿体基因组序列特征分析

Characterization of the complete chloroplast genome sequence of .

作者信息

Wu Zeng-Yuan, Du Xin-Yu, Milne Richard I, Liu Jie, Li De-Zhu

机构信息

Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Yunnan, China.

Institute of Molecular Plant Sciences, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.

出版信息

Mitochondrial DNA B Resour. 2017 Oct 17;2(2):735-737. doi: 10.1080/23802359.2017.1390420.

DOI:10.1080/23802359.2017.1390420
PMID:33473963
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800727/
Abstract

The complete chloroplast genome of Trécul was determined in this study. The total genome size was 153,925 bp in length, containing a pair of inverted repeats (IRs) of 25,443 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 84,947 bp and 18,092 bp, respectively. The GC contents is 36.5%. A total of 112 unique genes were annotated, including 30 tRNA, four rRNA, and 78 protein-coding genes. This is the first report of a cp genome for the formerly recognised family , and it confirmed that belongs within Urticaceae.

摘要

本研究测定了Trécul的完整叶绿体基因组。基因组全长153,925 bp,包含一对25,443 bp的反向重复序列(IRs),它们被分别为84,947 bp的大单拷贝(LSC)和18,092 bp的小单拷贝(SSC)隔开。GC含量为36.5%。共注释了112个独特基因,包括30个tRNA、4个rRNA和78个蛋白质编码基因。这是关于以前认可的该科叶绿体基因组的首次报道,并且证实了其属于荨麻科。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f51/7800727/e5df728e3b72/TMDN_A_1390420_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f51/7800727/e5df728e3b72/TMDN_A_1390420_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f51/7800727/e5df728e3b72/TMDN_A_1390420_F0001_B.jpg

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本文引用的文献

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PLoS One. 2015 Nov 3;10(11):e0141821. doi: 10.1371/journal.pone.0141821. eCollection 2015.
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Bandage: interactive visualization of de novo genome assemblies.绷带:从头基因组组装的交互式可视化
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3
Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae).
叶绿体系统发育基因组学分析解析了难处理的竹族(禾本科)的深层次关系。
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Molecular phylogeny of the nettle family (Urticaceae) inferred from multiple loci of three genomes and extensive generic sampling.基于三个基因组多个基因座和广泛的属级取样的荨麻科(荨麻科)分子系统发育。
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Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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Therapeutic effects of total coumarins from Urtica dentata Hand on collagen-induced arthritis in Balb/c mice.杠板归总香豆素对胶原诱导的 Balb/c 小鼠关节炎的治疗作用。
J Ethnopharmacol. 2011 Nov 18;138(2):523-9. doi: 10.1016/j.jep.2011.09.050. Epub 2011 Oct 1.
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High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae).六份竹子叶绿体基因组的高通量测序:温带木本竹子(禾本科:竹亚科)的系统发育意义。
PLoS One. 2011;6(5):e20596. doi: 10.1371/journal.pone.0020596. Epub 2011 May 31.