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来自中国的扇蟹科螃蟹(十足目:短尾亚目)线粒体全基因组特征及其系统发育分析

Characterization of the complete mitochondrial genome of Xanthid crab, from China (Decapoda: Brachyura) and its phylogenetic analysis.

作者信息

Xie Zhuofang, Tan Huaqiang, Lin Fan, Guan Mengyun, Waiho Khor, Fang Shaobin, Ikhwanuddin Mhd, Fazhan Hanafiah, Ma Hongyu

机构信息

Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, China.

Institute of Tropical Aquaculture, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia.

出版信息

Mitochondrial DNA B Resour. 2018 Mar 27;3(1):397-398. doi: 10.1080/23802359.2018.1456374.

DOI:10.1080/23802359.2018.1456374
PMID:33474181
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800503/
Abstract

The complete mitochondrial genome sequence of from China has been amplified and sequenced in this study. The mitogenome assembly was found to be 15,924 bp in length with base composition of A (32.88%), G (10.58%), C (20.87%), T (35.66%), A + T (68.54%), and G + C (31.46%). It contained 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and a control region. The phylogenetic position was constructed and the was closely clustered with and . The complete mitochondrial genome sequence would be useful for further understanding the evolution of .

摘要

本研究对来自中国的[物种名称]的完整线粒体基因组序列进行了扩增和测序。发现该线粒体基因组组装长度为15,924 bp,碱基组成为A(32.88%)、G(10.58%)、C(20.87%)、T(35.66%),A+T(68.54%),G+C(31.46%)。它包含13个蛋白质编码基因、22个转运RNA基因、两个核糖体RNA基因和一个控制区。构建了系统发育位置,[物种名称]与[相关物种1]和[相关物种2]紧密聚类。完整的线粒体基因组序列将有助于进一步了解[物种名称]的进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cc/7800503/d6873fe3ef37/TMDN_A_1456374_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cc/7800503/d6873fe3ef37/TMDN_A_1456374_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cc/7800503/d6873fe3ef37/TMDN_A_1456374_F0001_B.jpg

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本文引用的文献

1
Complete mitochondrial genome of (Decapoda, Xanthidae) from the Philippines.来自菲律宾的(十足目,扇蟹科)线粒体全基因组。
Mitochondrial DNA B Resour. 2018 Feb 10;3(1):205-206. doi: 10.1080/23802359.2018.1437833.
2
The complete mitochondrial genome and phylogenetic analysis of (Decapoda: Brachyura: Matutidae).(十足目:短尾亚目:黎明蟹科)的线粒体全基因组及系统发育分析
Mitochondrial DNA B Resour. 2018 Feb 7;3(1):157-158. doi: 10.1080/23802359.2018.1437802.
3
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
4
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.ETE 3:系统发育基因组数据的重建、分析与可视化
Mol Biol Evol. 2016 Jun;33(6):1635-8. doi: 10.1093/molbev/msw046. Epub 2016 Feb 26.
5
First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics.中华绒螯蟹线粒体基因组首次测序:系统发育基因组学与群体遗传学意义
Sci Rep. 2015 Jul 30;5:11524. doi: 10.1038/srep11524.