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两种濒危形式的塞凡湖鳟线粒体基因组的测序

Sequencing of two mitochondrial genomes of endangered form of the Sevan trout .

作者信息

Nedoluzhko Artem V, Simonov Evgeniy, Rastorguev Sergey M, Boulygina Eugenia S, Sharko Fedor S, Tsygankova Svetlana V, Nguyen Van Quan, Gabrielyan Bardukh K, Roubenyan Haikaz R, Levin Boris A

机构信息

National Research Centre "Kurchatov Institute", Moscow, Russia.

Laboratory of Fish Ecology, Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia.

出版信息

Mitochondrial DNA B Resour. 2018 Apr 23;3(2):469-471. doi: 10.1080/23802359.2018.1462120.

DOI:10.1080/23802359.2018.1462120
PMID:33474207
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800011/
Abstract

The two complete mitochondrial genomes of endangered form of the Sevan trout are published in this paper. The mitochondrial DNA (mtDNA) is 16,677 base pairs (bp) in length and contained 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The overall base composition of the genome in descending order was 29.4% - C, 27.9% - A, 26.0% - T, 16.7% - G, without a significant AT bias of 53.9%.

摘要

本文发表了两种濒危形式的塞凡湖鳟鱼的完整线粒体基因组。线粒体DNA(mtDNA)长度为16,677个碱基对(bp),包含13个蛋白质编码基因、2个rRNA基因和22个tRNA基因。基因组的总体碱基组成按降序排列为:29.4% - C、27.9% - A、26.0% - T、16.7% - G,不存在53.9%的显著AT偏向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/91ff/7800011/fe52ed3a7a40/TMDN_A_1462120_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/91ff/7800011/fe52ed3a7a40/TMDN_A_1462120_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/91ff/7800011/fe52ed3a7a40/TMDN_A_1462120_F0001_B.jpg

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本文引用的文献

1
Two complete mitochondrial genomes of extinct form of the Sevan trout .已灭绝的塞凡湖鳟鱼的两个完整线粒体基因组
Mitochondrial DNA B Resour. 2017 Dec 21;3(1):40-41. doi: 10.1080/23802359.2017.1419096.
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Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data.Norgal:从全基因组测序数据中提取和从头组装线粒体DNA
BMC Bioinformatics. 2017 Nov 21;18(1):510. doi: 10.1186/s12859-017-1927-y.
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