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(菊科)的完整质体基因组序列:韩国郁陵岛的一种特有物种。

The complete plastid genome sequence of (Asteraceae): an endemic species of Ulleung Island of Korea.

作者信息

Kim Jung Sung, Lee Woong, Pak Jae-Hong

机构信息

Department of Forest Science, Chungbuk National University, Cheongju, Republic of Korea.

Research Institute for Dokdo and Ulleungdo Island, Kyungpook National University, Daegu, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2018 Apr 23;3(2):476-477. doi: 10.1080/23802359.2018.1463147.

Abstract

The characteristic of complete chloroplast (cp) genome sequence of one of famous insular plant and an endemic to Ulleung Island of Korea, was firstly introduced in the present study. It was 150,985 bp and contained a large single copy region (82,786 bp) and a small single copy region (18,281 bp) which were separated by two inverted repeat regions (24,959 bp). In total, 131 genes were identified and they were consisted of 76 coding genes, eight rRNA genes, and 36 tRNA genes. Comparing to the previously reported and cp genomes, we found complete inversion of SSC region in this taxa. gene was pseudogenes due to 1 bp insertion of poly-A sequence in the 3' of exon 2.

摘要

本研究首次介绍了韩国郁陵岛特有的著名岛屿植物之一的完整叶绿体(cp)基因组序列特征。其长度为150,985 bp,包含一个大单拷贝区域(82,786 bp)和一个小单拷贝区域(18,281 bp),这两个区域被两个反向重复区域(24,959 bp)隔开。总共鉴定出131个基因,它们由76个编码基因、8个rRNA基因和36个tRNA基因组成。与先前报道的cp基因组相比,我们发现该分类群的SSC区域完全倒位。由于外显子2的3'端插入了1个聚腺苷酸序列, 基因成为假基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b8d7/7799449/030675139b1c/TMDN_A_1463147_F0001_C.jpg

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