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(芹亚科)的完整叶绿体基因组序列。

The complete chloroplast genome sequence of (Apioideae).

作者信息

Zhang Hui, Wang Xiao-Fan, Cao Da, Niu Jun-Feng, Wang Zhe-Zhi

机构信息

Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, Shaanxi Normal University, Xi'an, Shaanxi, P. R. China.

National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an, Shaanxi, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2018 Apr 23;3(2):480-481. doi: 10.1080/23802359.2018.1436995.

Abstract

is endemic in Shaanxi province (China), and is used as in folk. Owing to important medicinal value, wild has been over-exploited and become quite rare in China during over 2000 years. sensu lato (s.l.; subfamily Apioideae) is a taxonomically complex and controversial group, and is clearly different from members of the clade with the morphological and molecular results. The complete chloroplast DNA sequence of (GenBank accession number: MF924726) was determined in our study. The size of chloroplast genome of is 147,104 bp, including a large single-copy (LSC) region of 93376 bp and a small single-copy (SSC) region of 17,574 bp separated by a pair of identical inverted repeat regions (IRs) of 18,077 bp each. A total of 125 genes were successfully annotated containing 83 protein-coding genes, 34 tRNA genes and 8 rRNA genes. GC content of IRs region is the highest (44.5%). The result of Phylogenomic analysis supports the difference of from clade.

摘要

在中国陕西省为地方特有种,且在民间被使用。由于其重要的药用价值,在两千多年间,野生的该物种遭到过度开发,在中国已变得十分稀少。广义的[物种名称](s.l.;芹亚科)是一个分类学上复杂且有争议的类群,并且根据形态学和分子学结果,[该物种名称]与[另一类群名称]分支的成员明显不同。在我们的研究中测定了[该物种名称]的完整叶绿体DNA序列(GenBank登录号:MF924726)。[该物种名称]叶绿体基因组大小为147,104 bp,包括一个93,376 bp的大单拷贝(LSC)区域和一个17,574 bp的小单拷贝(SSC)区域,它们被一对各为18,077 bp的相同反向重复区域(IRs)隔开。总共成功注释了125个基因,包括83个蛋白质编码基因、34个tRNA基因和8个rRNA基因。IRs区域的GC含量最高(44.5%)。系统发育基因组学分析结果支持[该物种名称]与[另一类群名称]分支的差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a09c/7799626/0d938c56a07f/TMDN_A_1436995_F0001_B.jpg

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