Choi Sun A, Kim YeJi, Kim Kyu-Yeob, Kim Jong Hwan, Seong Rack Seon
Herbal Medicine Research Division, National Institute of Food and Drug Safety Evaluation, Ministry of Food and Drug Safety, Cheongju-si, Chungcheongbuk-do, Republic of Korea.
Mitochondrial DNA B Resour. 2016 Apr 11;1(1):280-281. doi: 10.1080/23802359.2016.1166077.
The complete chloroplast genome sequence of gigas, a traditional herbal plant used in treating diseases, was obtained by de novo assembly using illumina sequencing data (Illumina Inc., San Diego, CA). The circular molecule of the genome was constructed of four parts, with a size of 146,916 bp in total - a large single copy (LSC) region of 93,118 bp, a small single copy (SSC) region of 17,582 bp and two inverted repeat (IRa and IRb) regions of 18,108 bp each. There were a total of 113 annotated genes, including 80 protein-coding genes, 29 tRNA genes and four rRNA genes. The phylogenetic result acquired through maximum parsimony analysis showed that is closely related with and .
通过使用Illumina测序数据(Illumina公司,加利福尼亚州圣地亚哥)进行从头组装,获得了用于治疗疾病的传统草药植物gigas的完整叶绿体基因组序列。基因组的环状分子由四个部分组成,总大小为146,916 bp——一个93,118 bp的大单拷贝(LSC)区域、一个17,582 bp的小单拷贝(SSC)区域和两个各为18,108 bp的反向重复(IRa和IRb)区域。共有113个注释基因,包括80个蛋白质编码基因、29个tRNA基因和4个rRNA基因。通过最大简约分析获得的系统发育结果表明, 与 和 密切相关。