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一种濒危树种(无患子目:楝科)的完整叶绿体基因组

Complete chloroplast genome of an endangered tree species, (Sapindales: Meliaceae).

作者信息

Xin Gui-Liang, Liu Jia-Qian, Liu Jia

机构信息

Key Laboratory of Resource Biology and Biotechnology in Western China (Northwest University), Ministry of Education, School of Life Science, Northwest University, Xi'an, China.

出版信息

Mitochondrial DNA B Resour. 2018 Jun 8;3(2):663-664. doi: 10.1080/23802359.2018.1476074.

DOI:10.1080/23802359.2018.1476074
PMID:33474276
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799959/
Abstract

The whole cp genome of was 159,502 bp in length, containing a pair of inverted repeat (26,961 bp for each), a large single copy (87,199 bp) and a small single copy (18,381 bp) regions. The cp genome encoded 138 genes, including 89 protein-coding genes, 40 tRNA genes, 8 rRNA genes and 1 pseudogene. The nucleotide composition was asymmetric (30.7% A, 19.3% C, 18.6% G and 31.4% T) with an overall GC content of 37.9%. The maximum likelihood phylogenetic analysis based on 21 complete cp genome sequences showed that closely related to Azadirachta indica.

摘要

该植物的完整叶绿体基因组长度为159,502 bp,包含一对反向重复序列(每个26,961 bp)、一个大单拷贝区(87,199 bp)和一个小单拷贝区(18,381 bp)。叶绿体基因组编码138个基因,包括89个蛋白质编码基因、40个tRNA基因、8个rRNA基因和1个假基因。核苷酸组成不对称(A占30.7%,C占19.3%,G占18.6%,T占31.4%),总体GC含量为37.9%。基于21个完整叶绿体基因组序列的最大似然系统发育分析表明,该植物与印楝关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5a5/7799959/405f5a6e6809/TMDN_A_1476074_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5a5/7799959/405f5a6e6809/TMDN_A_1476074_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5a5/7799959/405f5a6e6809/TMDN_A_1476074_F0001_B.jpg

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Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
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Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.
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