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(小仓)中井(天门冬科)的完整叶绿体基因组序列

The complete chloroplast genome sequence of (Koidz.) Nakai (Asparagaceae).

作者信息

Jang Yeeun, Park Jee Young, Kang Shin-Jae, Park Hyun-Seung, Shim Hyeonah, Lee Taek Joo, Kang Jung Hwa, Sung Sang Hyun, Yang Tae-Jin

机构信息

Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.

Hantaek Botanical Garden, Yongin, Korea.

出版信息

Mitochondrial DNA B Resour. 2018 Oct 8;3(2):1052-1053. doi: 10.1080/23802359.2018.1511858.

DOI:10.1080/23802359.2018.1511858
PMID:33474411
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799732/
Abstract

(Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of was completed by assembly with whole genome sequence data. The chloroplast genome of is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that has a close relationship with other species, and , but is farther than the distance between them.

摘要

(小泉)中井是一种属于天门冬科的多年生草本植物,已成为一种受欢迎的观赏植物。在本研究中,通过对全基因组序列数据进行组装完成了(该植物名称缺失)的叶绿体基因组序列。(该植物名称缺失)的叶绿体基因组长度为156,416 bp,由84,788 bp的大单拷贝(LSC)、18,206 bp的小单拷贝(SSC)和一对26,711 bp的反向重复区域(IRa和IRb)组成,分为四个不同部分。总共鉴定出114个基因,包括80个蛋白质编码基因、30个tRNA基因和4个rRNA基因。系统发育分析表明,(该植物名称缺失)与其他(相关植物名称缺失)物种,(相关植物名称缺失)和(相关植物名称缺失)关系密切,但比它们之间的距离更远。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/456c/7799732/f3ad8369ca42/TMDN_A_1511858_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/456c/7799732/f3ad8369ca42/TMDN_A_1511858_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/456c/7799732/f3ad8369ca42/TMDN_A_1511858_F0001_B.jpg

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