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.的叶绿体全基因组的结构特征与系统发育分析

Structural characteristic and phylogenetic analysis of the complete chloroplast genome of .

作者信息

Chen Shuwen, Xu Zhenggang, Zhao Yunlin, Zhong Xiaofen, Li Chaoyang, Yang Guiyan

机构信息

Key Laboratory of Economic Plant Resources Development and Utilization in Shaanxi Province, College of Forestry, Northwest A & F University, Yangling, Shaanxi, China.

Hunan Research Center of Engineering Technology for Utilization of Environmental and Resources Plant, Central South University of Forestry and Technology, Changsha, Hunan, China.

出版信息

Mitochondrial DNA B Resour. 2018 Oct 8;3(2):1131-1132. doi: 10.1080/23802359.2018.1521313.

DOI:10.1080/23802359.2018.1521313
PMID:33474443
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799632/
Abstract

Chloroplast genomes are widely used in genetic engineering, molecular marker development, and phylogeny. In order to analyze the complete chloroplast genome of , the complete chloroplast genome of was sequenced and annotated. On the other hand, phylogenetic analysis of the chloroplast genome of was carried out. The results showed that the whole length of the chloroplast genome of was 147,604 bp, and had a typical conserved quadripartite structure. The G and C basic content of chloroplast was 36.3%. The genome contained 83 protein-coding genes, 34 tRNA genes, and 6 rRNA genes. Among the protein-coding genes, 10 genes contain a single intron and 2 genes contain two introns. The phylogeny of s indicated that the closest phylogenetic relationship was . This study provides materials for the molecular study of may improve the carnation industry.

摘要

叶绿体基因组广泛应用于基因工程、分子标记开发和系统发育研究。为了分析[物种名称]的完整叶绿体基因组,对[物种名称]的完整叶绿体基因组进行了测序和注释。另一方面,对[物种名称]的叶绿体基因组进行了系统发育分析。结果表明,[物种名称]叶绿体基因组全长147,604 bp,具有典型的保守四分体结构。[物种名称]叶绿体的G和C碱基含量为36.3%。该基因组包含83个蛋白质编码基因、34个tRNA基因和6个rRNA基因。在蛋白质编码基因中,10个基因含有一个内含子,2个基因含有两个内含子。[物种名称]的系统发育表明,其最密切的系统发育关系是与[物种名称]。本研究为[物种名称]的分子研究提供了材料,可能会促进康乃馨产业的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a9a/7799632/1869e55d2544/TMDN_A_1521313_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a9a/7799632/1869e55d2544/TMDN_A_1521313_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a9a/7799632/1869e55d2544/TMDN_A_1521313_F0001_C.jpg

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本文引用的文献

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Mitochondrial DNA B Resour. 2017 Nov 26;2(2):843-844. doi: 10.1080/23802359.2017.1407687.
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Genome-Wide Identification and Characterization of Aquaporins and Their Role in the Flower Opening Processes in Carnation ().康乃馨开花过程中水通道蛋白的全基因组鉴定和特征及其作用()。
Molecules. 2018 Jul 29;23(8):1895. doi: 10.3390/molecules23081895.
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Chloroplast Genome Analysis of Resurrection Tertiary Relict Highlights Genes Important for Desiccation Stress Response.
“组学”对质体行为促进类胡萝卜素积累的见解。
Front Plant Sci. 2022 Oct 6;13:1001756. doi: 10.3389/fpls.2022.1001756. eCollection 2022.
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Mitochondrial DNA B Resour. 2020 Jul 30;5(3):3069-3070. doi: 10.1080/23802359.2020.1797584.
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Understanding the Genetic Domestication History of the Jianchang Duck by Genotyping and Sequencing of Genomic Genes Under Selection.通过对选择的基因组基因进行基因分型和测序来了解建昌鸭的遗传驯化历史
G3 (Bethesda). 2020 May 4;10(5):1469-1476. doi: 10.1534/g3.119.400893.
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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.交互式生命树(iTOL)v3:用于展示和注释系统发育树及其他树状图的在线工具。
Nucleic Acids Res. 2016 Jul 8;44(W1):W242-5. doi: 10.1093/nar/gkw290. Epub 2016 Apr 19.