Ivanova Zdravka, Sablok Gaurav, Daskalova Evelina, Zahmanova Gergana, Apostolova Elena, Yahubyan Galina, Baev Vesselin
Department of Plant Physiology and Molecular Biology, University of Plovdiv Plovdiv, Bulgaria.
Plant Functional Biology and Climate Change Cluster, University of Technology at Sydney, Sydney NSW, Australia.
Front Plant Sci. 2017 Feb 20;8:204. doi: 10.3389/fpls.2017.00204. eCollection 2017.
is a paleolithic tertiary relict species, best known as a resurrection plant with remarkable tolerance to desiccation. When exposed to severe drought stress, shows an ability to maintain the structural integrity of its photosynthetic apparatus, which re-activates easily upon rehydration. We present here the results from the assembly and annotation of the chloroplast (cp) genome of , which was further subjected to comparative analysis with the cp genomes of closely related species. showed a cp genome size of 153,099 bp, harboring a pair of inverted repeats (IR) of 25,415 bp separated by small and large copy regions (SSC and LSC) of 17,826 and 84,443 bp. The genome structure, gene order, GC content and codon usage are similar to those of the typical angiosperm cp genomes. The genome hosts 137 genes representing 70.66% of the plastome, which includes 86 protein-coding genes, 36 tRNAs, and 4 rRNAs. A comparative plastome analysis with other closely related Lamiales members revealed conserved gene order in the IR and LSC/SSC regions. A phylogenetic analysis based on protein-coding genes from 33 species defines this species as belonging to the Gesneriaceae family. From an evolutionary point of view, a site-specific selection analysis detected positively selected sites in 17 genes, most of which are involved in photosynthesis (e.g., , etc.). The observed codon substitutions may be interpreted as being a consequence of molecular adaptation to drought stress, which ensures an evolutionary advantage to
是一种旧石器时代第三纪残遗物种,最为人所知的是作为一种对干燥具有显著耐受性的复苏植物。当暴露于严重干旱胁迫时,它表现出维持其光合装置结构完整性的能力,在重新水化后能轻易重新激活。我们在此展示了该物种叶绿体(cp)基因组的组装和注释结果,并进一步与近缘物种的cp基因组进行了比较分析。该物种的cp基因组大小为153,099 bp,包含一对25,415 bp的反向重复序列(IR),由17,826 bp的小单拷贝区域(SSC)和84,443 bp的大单拷贝区域(LSC)隔开。基因组结构、基因顺序、GC含量和密码子使用情况与典型被子植物cp基因组相似。该基因组包含137个基因,占质体基因组的70.66%,其中包括86个蛋白质编码基因、36个tRNA和4个rRNA。与其他近缘唇形目成员的比较质体基因组分析揭示了IR和LSC/SSC区域中保守的基因顺序。基于33个物种的蛋白质编码基因进行的系统发育分析将该物种定义为属于苦苣苔科。从进化的角度来看,位点特异性选择分析在17个基因中检测到正选择位点,其中大多数与光合作用有关(例如,等等)。观察到的密码子替换可能被解释为分子适应干旱胁迫的结果,这确保了对……的进化优势