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一种亚热带树木(樟科)的完整叶绿体基因组序列

Complete chloroplast genome sequence of a subtropical tree, (Lauranceae).

作者信息

Liao Qiong, Ye Tinghong, Song Yu

机构信息

State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, Sichuan, China.

Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China.

出版信息

Mitochondrial DNA B Resour. 2018 Oct 31;3(2):1216-1217. doi: 10.1080/23802359.2018.1532331.

DOI:10.1080/23802359.2018.1532331
PMID:33474469
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799558/
Abstract

(Meisn.) D.G. Long is the single tree species of the genus D.G. Long in the family Lauraceae. To better determine its phylogenetic location with respect to the related Lauraceae species, the complete chloroplast genome of was sequenced. The whole plastome is 152,555 bp in length, consisting of a pair of inverted repeat (IR) regions of 20,079 bp, one large single copy (LSC) region of 93,604 bp, and one small single copy (SSC) region of 18,793 bp. The genome contains 127 genes, including 83 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole plastome is 39.1%. Further, maximum likelihoodphylogenetic analyses were conducted using 34 complete plastomes of the Lauraceae, which support close relationships between and , , , , , and rather than or .

摘要

(梅斯恩)D.G. 朗是樟科D.G. 朗属的唯一树种。为了更好地确定其相对于相关樟科物种的系统发育位置,对其完整叶绿体基因组进行了测序。整个质体基因组长度为152,555 bp,由一对20,079 bp的反向重复(IR)区域、一个93,604 bp的大单拷贝(LSC)区域和一个18,793 bp的小单拷贝(SSC)区域组成。该基因组包含127个基因,包括83个蛋白质编码基因、8个核糖体RNA基因和36个转移RNA基因。整个质体基因组的总体GC含量为39.1%。此外,使用樟科的34个完整质体基因组进行了最大似然系统发育分析,结果支持D.G. 朗与[其他物种名称]、[其他物种名称]、[其他物种名称]、[其他物种名称]、[其他物种名称]和[其他物种名称]关系密切,而非与[另外两个物种名称]或[另外两个物种名称]关系密切。

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本文引用的文献

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Comparative chloroplast genomics and phylogenetics of nine Lindera species (Lauraceae).九种樟科山胡椒属植物的叶绿体基因组比较基因组学与系统发育学研究。
Sci Rep. 2018 Jun 11;8(1):8844. doi: 10.1038/s41598-018-27090-0.
2
Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids.樟科叶绿体基因组的进化比较及对木兰类丢失事件的认识。
Genome Biol Evol. 2017 Sep 1;9(9):2354-2364. doi: 10.1093/gbe/evx180.
3
Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae.
七种奥克蒂欧属植物(樟科)完整叶绿体基因组的比较分析证实了奥克蒂欧属复合体内部的低序列差异。
Sci Rep. 2022 Jan 21;12(1):1120. doi: 10.1038/s41598-021-04635-4.
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The complete plastid genome of an evergreen tree (Lauraceae: Laureae).一种常绿树(樟科:樟亚科)的完整质体基因组。
Mitochondrial DNA B Resour. 2020 Jun 17;5(3):2483-2484. doi: 10.1080/23802359.2020.1778566.
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Conflicting phylogenetic signals in plastomes of the tribe Laureae (Lauraceae).樟科月桂族叶绿体基因组中相互冲突的系统发育信号。
PeerJ. 2020 Oct 15;8:e10155. doi: 10.7717/peerj.10155. eCollection 2020.
樟科两种热带树木云南润楠和滇润楠叶绿体全基因组序列的比较分析
Front Plant Sci. 2015 Aug 25;6:662. doi: 10.3389/fpls.2015.00662. eCollection 2015.
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MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.MEGA5:用于最大似然法、进化距离法和最大简约法的分子进化遗传学分析。
Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.