Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Mangiagalli 25, 20133 Milan, Italy.
Department of Chemistry in Pharmaceutical Sciences (QUICIFARM), Pharmacy Faculty, Complutense University, Plaza de Ramon y Cajal, s/n, 28040 Madrid, Spain.
Bioorg Chem. 2021 Mar;108:104644. doi: 10.1016/j.bioorg.2021.104644. Epub 2021 Jan 11.
Benzil reductases are dehydrogenases preferentially active on aromatic 1,2-diketones, but the reasons for this peculiar substrate recognition have not yet been clarified. The benzil reductase (KRED1-Pglu) from the non-conventional yeast Pichia glucozyma showed excellent activity and stereoselectivity in the monoreduction of space-demanding aromatic 1,2-dicarbonyls, making this enzyme attractive as biocatalyst in organic chemistry. Structural insights into the stereoselective monoreduction of 1,2-diketones catalyzed by KRED1-Pglu were investigated starting from its 1.77 Å resolution crystal structure, followed by QM and classical calculations; this study allowed for the identification and characterization of the KRED1-Pglu reactive site. Once identified the recognition elements involved in the stereoselective desymmetrization of bulky 1,2-dicarbonyls mediated by KRED1-Pglu, a mechanism was proposed together with an in silico prediction of substrates reactivity.
苯甲酰还原酶是一类优先作用于芳香族 1,2-二酮的脱氢酶,但这种特殊的底物识别的原因尚未阐明。非传统酵母毕赤酵母(Pichia glucozyma)中的苯甲酰还原酶(KRED1-Pglu)在空间位阻较大的芳香族 1,2-二羰基化合物的单还原中表现出优异的活性和立体选择性,使该酶成为有机化学中具有吸引力的生物催化剂。本研究从其 1.77Å分辨率的晶体结构开始,通过 QM 和经典计算,对 KRED1-Pglu 催化的 1,2-二酮立体选择性单还原进行了结构分析;这使得 KRED1-Pglu 的反应部位得以鉴定和表征。一旦确定了 KRED1-Pglu 介导的大位阻 1,2-二羰基化合物的立体选择性去对称化所涉及的识别元件,就提出了一种机制,并对底物的反应性进行了计算机预测。