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引领新药研发进程:bRo5化学空间中的通透性、溶解度及物理化学性质

Steering New Drug Discovery Campaigns: Permeability, Solubility, and Physicochemical Properties in the bRo5 Chemical Space.

作者信息

Caron Giulia, Kihlberg Jan, Goetz Gilles, Ratkova Ekaterina, Poongavanam Vasanthanathan, Ermondi Giuseppe

机构信息

Molecular Biotechnology and Health Sciences Department, University of Torino, Via Quarello, 15, 10135 Torino, Italy.

Department of Chemistry - BMC, Uppsala University, SE-75123 Uppsala, Sweden.

出版信息

ACS Med Chem Lett. 2021 Jan 5;12(1):13-23. doi: 10.1021/acsmedchemlett.0c00581. eCollection 2021 Jan 14.

DOI:10.1021/acsmedchemlett.0c00581
PMID:33488959
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7812602/
Abstract

An increasing number of drug discovery programs concern compounds in the beyond rule of 5 (bRo5) chemical space, such as cyclic peptides, macrocycles, and degraders. Recent results show that common paradigms of property-based drug design need revision to be applied to larger and more flexible compounds. A virtual event entitled "Solubility, permeability and physico-chemical properties in the bRo5 chemical space" was organized to provide preliminary guidance on how to make the discovery of oral drugs in the bRo5 space more effective. The four speakers emphasized the importance of the bRo5 space as a source of new oral drugs and provided examples of experimental and computational methods specifically tailored for design and optimization in this chemical space.

摘要

越来越多的药物发现项目关注5规则之外(bRo5)化学空间中的化合物,如环肽、大环化合物和降解剂。最近的结果表明,基于性质的药物设计的常见范式需要修订,以便应用于更大、更灵活的化合物。组织了一场名为“bRo5化学空间中的溶解度、渗透性和物理化学性质”的虚拟活动,以提供关于如何使bRo5空间中口服药物的发现更有效的初步指导。四位演讲者强调了bRo5空间作为新型口服药物来源的重要性,并提供了专门为该化学空间的设计和优化量身定制的实验和计算方法的示例。

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本文引用的文献

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ADMET DMPK. 2020 Jul 8;8(3):207-214. doi: 10.5599/admet.834. eCollection 2020.
2
Membrane Permeability in Cyclic Peptides is Modulated by Core Conformations.环状肽的膜通透性受核心构象调节。
J Chem Inf Model. 2021 Jan 25;61(1):263-269. doi: 10.1021/acs.jcim.0c00803. Epub 2020 Dec 22.
3
Predicting the Permeability of Macrocycles from Conformational Sampling - Limitations of Molecular Flexibility.从构象采样预测大环的渗透性 - 分子柔性的局限性。
J Pharm Sci. 2021 Jan;110(1):301-313. doi: 10.1016/j.xphs.2020.10.052. Epub 2020 Oct 29.
4
"Flexible-Acceptor" General Solubility Equation for beyond Rule of 5 Drugs.超越“五规则”药物的“柔性受体”通用溶解方程。
Mol Pharm. 2020 Oct 5;17(10):3930-3940. doi: 10.1021/acs.molpharmaceut.0c00689. Epub 2020 Sep 4.
5
Degraders early developability assessment: face-to-face with molecular properties.降解剂早期开发评估:直面分子特性。
Drug Discov Today. 2020 Sep;25(9):1585-1591. doi: 10.1016/j.drudis.2020.06.015. Epub 2020 Jun 18.
6
New Chemical Modalities and Strategic Thinking in Early Drug Discovery.早期药物发现中的新化学模式与战略思维
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7
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Eur J Pharm Sci. 2020 Apr 15;146:105274. doi: 10.1016/j.ejps.2020.105274. Epub 2020 Feb 20.
8
Solution Conformations Explain the Chameleonic Behaviour of Macrocyclic Drugs.解决方案构象解释了大环药物的变色龙行为。
Chemistry. 2020 Apr 21;26(23):5231-5244. doi: 10.1002/chem.201905599. Epub 2020 Apr 6.
9
Flexibility in early drug discovery: focus on the beyond-Rule-of-5 chemical space.早期药物发现的灵活性:关注超越 Rule-of-5 的化学空间。
Drug Discov Today. 2020 Apr;25(4):621-627. doi: 10.1016/j.drudis.2020.01.012. Epub 2020 Jan 25.
10
Drug Syntheses Beyond the Rule of 5.超越 5 规则的药物合成。
Chemistry. 2020 Jan 2;26(1):49-88. doi: 10.1002/chem.201902716. Epub 2019 Oct 11.