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使用L-组氨酸缓冲液对寡核苷酸进行高分辨率聚丙烯酰胺凝胶电泳。

High-resolution polyacrylamide gel electrophoresis of oligonucleotides using L-histidine buffer.

作者信息

Mandecki W, Hayden M

机构信息

Corporate Molecular Biology, Abbott Laboratories, Abbott Park, IL 60064.

出版信息

DNA. 1988 Jan-Feb;7(1):57-62. doi: 10.1089/dna.1988.7.57.

DOI:10.1089/dna.1988.7.57
PMID:3349905
Abstract

We have found that 50 mM L-histidine pH 7.6 as a buffer for gel electrophoresis greatly improves the resolution of oligonucleotides less than 70 residues long on denaturing polyacrylamide gels. The histidine buffer increases spacing between DNA bands on the gel about twofold in comparison with a standard buffer (89 mM Tris-borate, 2 mM EDTA pH 8.3). In addition, low conductivity of the histidine buffer results in a threefold reduction of the electrophoresis time. Conditions for electrophoresis were optimized by varying both histidine and acrylamide concentrations. Other polycationic compounds, such as spermidine and ethylenediamine, were also tested for improved resolution of oligonucleotides. Several hypotheses as to the factors influencing the separation of DNA on gels are presented.

摘要

我们发现,50 mM pH 7.6的L-组氨酸作为凝胶电泳缓冲液,能显著提高变性聚丙烯酰胺凝胶上长度小于70个残基的寡核苷酸的分辨率。与标准缓冲液(89 mM Tris-硼酸,2 mM EDTA pH 8.3)相比,组氨酸缓冲液使凝胶上DNA条带之间的间距增加了约两倍。此外,组氨酸缓冲液的低电导率使电泳时间缩短了两倍。通过改变组氨酸和丙烯酰胺浓度对电泳条件进行了优化。还测试了其他聚阳离子化合物,如亚精胺和乙二胺,以提高寡核苷酸的分辨率。本文提出了几个关于影响凝胶上DNA分离的因素的假设。

相似文献

1
High-resolution polyacrylamide gel electrophoresis of oligonucleotides using L-histidine buffer.使用L-组氨酸缓冲液对寡核苷酸进行高分辨率聚丙烯酰胺凝胶电泳。
DNA. 1988 Jan-Feb;7(1):57-62. doi: 10.1089/dna.1988.7.57.
2
Electrophoretic conditions for high resolution citrus isozymes in polyacrylamide gel electrophoresis.聚丙烯酰胺凝胶电泳中高分辨率柑橘同工酶的电泳条件。
Electrophoresis. 1995 Jan;16(1):32-8. doi: 10.1002/elps.1150160108.
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Apparent pore size of polyacrylamide gels: comparison of gels cast and run in Tris-acetate-EDTA and Tris-borate-EDTA buffers.聚丙烯酰胺凝胶的表观孔径:在 Tris-乙酸-EDTA 和 Tris-硼酸-EDTA 缓冲液中灌制和运行的凝胶的比较
Electrophoresis. 1998 Jul;19(10):1542-7. doi: 10.1002/elps.1150191004.
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Discontinuous buffer system for polyacrylamide and agarose gel electrophoresis of DNA fragments.用于DNA片段聚丙烯酰胺和琼脂糖凝胶电泳的不连续缓冲系统。
Electrophoresis. 1991 Apr;12(4):233-40. doi: 10.1002/elps.1150120402.
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Optimization of polyacrylamide gel electrophoresis conditions used for sequencing mixed oligodeoxyribonucleotides.用于测序混合寡聚脱氧核糖核苷酸的聚丙烯酰胺凝胶电泳条件的优化。
DNA. 1984 Oct;3(5):413-9. doi: 10.1089/dna.1984.3.413.
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Do DNA gel electrophoretic mobilities extrapolate to the free-solution mobility of DNA at zero gel concentration?DNA凝胶电泳迁移率能否外推至凝胶浓度为零时DNA在自由溶液中的迁移率?
Electrophoresis. 1998 May;19(5):635-42. doi: 10.1002/elps.1150190504.
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The resolution of DNA fragments in capillary electrophoresis in replaceable agarose gels.可替换琼脂糖凝胶中毛细管电泳法对DNA片段的分离
J Capillary Electrophor. 1996 May-Jun;3(3):173-9.
8
pK-matched running buffers for gel electrophoresis.用于凝胶电泳的pK匹配运行缓冲液。
Anal Biochem. 1999 May 15;270(1):112-22. doi: 10.1006/abio.1999.4064.
9
Denaturing gel electrophoresis for sequencing.用于测序的变性凝胶电泳
Curr Protoc Mol Biol. 2001 May;Chapter 7:Unit7.6. doi: 10.1002/0471142727.mb0706s16.
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Identification and suppression of secondary structures formed from deoxy-oligonucleotides during electrophoresis in denaturing polyacrylamide-gels.变性聚丙烯酰胺凝胶电泳过程中脱氧寡核苷酸形成的二级结构的鉴定与抑制
Nucleic Acids Res. 1981 Oct 10;9(19):4967-79. doi: 10.1093/nar/9.19.4967.

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Modification of gel architecture and TBE/TAE buffer composition to minimize heating during agarose gel electrophoresis.
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