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生物膜研究数据库:现状与潜在应用。

Databases for the study of biofilms: current status and potential applications.

机构信息

UCIBIO/REQUIMTE, BioSIM - Departamento de Biomedicina, Faculdade de Medicina da Universidade do Porto, Porto, Portugal.

LAQV/REQUIMTE, Departamento de Química e Bioquímica, Faculdade de Ciências da Universidade do Porto, Porto, Portugal.

出版信息

Biofouling. 2021 Jan;37(1):96-108. doi: 10.1080/08927014.2021.1876849. Epub 2021 Jan 28.

Abstract

Biofilms play an important role in health, being associated with >80% of all microbial infections in the body and in the development of antibiotic resistance. Research in this field has continuously produced large volumes of data. Being able to handle all this information will be paramount for progress in this field. However, this places a heavy burden on the development of strategies to gather, organize and make this information available in a way that can be readily and effectively used by those requiring it. Lately, efforts towards this goal have been reported, particularly with the development of Quorumpeps, BiofOmics, BaAMPs, QSPpred, dPABBs, aBiofilm and the Biofilms Structural Database. This work reviews these databases and highlights their applicability and potential, while stressing some of the challenges for the coming years in database development and usage brought about by the use of big data and machine learning.

摘要

生物膜在健康中起着重要作用,与体内 80%以上的微生物感染和抗生素耐药性的发展有关。该领域的研究不断产生大量数据。能够处理所有这些信息对于该领域的进展至关重要。然而,这给开发策略带来了沉重的负担,这些策略旨在以一种可以被需要它的人方便和有效地使用的方式收集、组织和提供这些信息。最近,已经有报道朝着这个目标努力,特别是在开发 Quorumpeps、BiofOmics、BaAMPs、QSPpred、dPABBs、aBiofilm 和 Biofilms 结构数据库方面。这项工作回顾了这些数据库,强调了它们的适用性和潜力,同时强调了在未来几年中,由于大数据和机器学习的使用,数据库开发和使用所面临的一些挑战。

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