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机器学习方法在评估镰刀菌和扩展青霉生长及抗真菌剂处理中产毒情况中的潜在应用。

Potential use of machine learning methods in assessment of Fusarium culmorum and Fusariumproliferatum growth and mycotoxin production in treatments with antifungal agents.

机构信息

Department of Microbiology and Ecology, University of Valencia, Valencia, Spain.

Department of Electronic Engineering, ETSE, University of Valencia, Valencia, Spain.

出版信息

Fungal Biol. 2021 Feb;125(2):123-133. doi: 10.1016/j.funbio.2019.11.006. Epub 2019 Nov 22.

DOI:10.1016/j.funbio.2019.11.006
PMID:33518202
Abstract

Fusarium-controlling fungicides are necessary to limit crop loss. Little is known about the effect of antifungal formulations at sub-lethal doses, and their interaction with abiotic factors, on Fusarium culmorum and F. proliferatum development and on zearalenone and fumonisin biosynthesis, respectively. In the present study different treatments based on sulfur, trifloxystrobin and demethylation inhibitor fungicides (cyproconazole, tebuconazole and prothioconazole) under different environmental conditions, in Maize Extract Medium, are assayed in vitro. Several machine learning methods (neural networks, random forest and extreme gradient boosted trees) have been applied for the first time for modeling growth of F. culmorum and F. proliferatum and zearalenone and fumonisin production, respectively. The most effective treatment was prothioconazole, 250 g/L + tebuconazole, 150 g/L. Effective doses of this formulation for reduction or total growth inhibition ranged as follows ED 0.49-1.70, ED 2.57-6.02 and ED 4.0-8.0 µg/mL, depending on the species, water activity and temperature. Overall, the growth rate and mycotoxin levels in cultures decreased when doses increased. Some treatments in combination with certain a and temperature values significantly induced toxin production. The extreme gradient boosted tree was the model able to predict growth rate and mycotoxin production with minimum error and maximum R value.

摘要

镰刀菌控制杀菌剂对于限制作物损失是必要的。对于亚致死剂量的抗真菌制剂及其与非生物因素的相互作用对尖孢镰刀菌和层出镰刀菌的发育以及玉米赤霉烯酮和伏马菌素生物合成的影响知之甚少。在本研究中,在不同环境条件下,在玉米提取培养基中,基于硫、三氟醚菌唑和脱甲基抑制剂杀菌剂(环丙唑醇、戊唑醇和丙硫菌唑)的不同处理进行了体外测定。首次应用几种机器学习方法(神经网络、随机森林和极端梯度增强树)分别对尖孢镰刀菌和层出镰刀菌的生长以及玉米赤霉烯酮和伏马菌素的产生进行建模。最有效的处理是丙硫菌唑,250 g/L+戊唑醇,150 g/L。该配方对减少或完全抑制生长的有效剂量如下 ED 0.49-1.70、ED 2.57-6.02 和 ED 4.0-8.0 µg/mL,具体取决于物种、水活度和温度。总体而言,当剂量增加时,培养物中的生长速率和霉菌毒素水平下降。某些处理与某些 a 和温度值结合时,会显著诱导毒素产生。极端梯度增强树是能够以最小误差和最大 R 值预测生长速率和霉菌毒素产生的模型。

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