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欧洲人群中的亚洲基因混合:来自波兰的新数据——比较EmsB微卫星分析和线粒体测序

Asian Admixture in European Populations: New Data From Poland Comparing EmsB Microsatellite Analyses and Mitochondrial Sequencing.

作者信息

Umhang Gérald, Knapp Jenny, Wassermann Marion, Bastid Vanessa, Peytavin de Garam Carine, Boué Franck, Cencek Tomasz, Romig Thomas, Karamon Jacek

机构信息

Wildlife Surveillance and Eco-Epidemiology Unit, National Reference Laboratory for Echinococcus spp., Rabies and Wildlife Laboratory, ANSES, Malzéville, France.

UMR CNRS 6249 Laboratoire Chrono-Environnement, Université Franche-Comté, Besançon, France.

出版信息

Front Vet Sci. 2021 Jan 15;7:620722. doi: 10.3389/fvets.2020.620722. eCollection 2020.

DOI:10.3389/fvets.2020.620722
PMID:33521093
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7843918/
Abstract

The cestode is the causative agent of a severe zoonotic disease: alveolar echinococcosis (AE). The parasite is distributed over a vast area in northern Eurasia and North America, but the impact of AE on human health is highly uneven between different regions. One hypothetical reason for this difference in virulence may be the genetic structure of which-based on mitochondrial sequences and EmsB microsatellite profiles-forms four distinct clades. These clades correspond approximately to their continents of origin: Asia, Europe, and North America, with a fourth clade apparently restricted to Mongolia and neighboring regions, even though this clade has not yet been described by EmsB genotyping. However, there are various records of genetic variants from the "wrong" region, e.g., "European" haplotypes in Western Canada, which may be the result of introduction or natural migration of host animals. One such example, prompting this study, is the recent record of an "Asian" mitochondrial haplotype in worms from foxes in Poland. At the time, this could not be confirmed by EmsB microsatellite analysis, a method that has proven to possess greater discriminatory power with the nuclear genome than sequencing of mitochondrial markers. Therefore, worms collected from foxes in Poland were examined both by EmsB analysis and sequencing of the full mitochondrial gene in order to allocate the samples to the European or Asian cluster. Based on EmsB analyses of 349 worms from 97 Polish red foxes, 92% of the worms clearly showed "European-type" EmsB profiles, but 27 worms (8%) from seven foxes showed profiles that clustered with samples of Asian origin. According to sequences, a total of 18 worms from 8 foxes belonged to the Asian cluster of haplotypes. The two methods did not fully agree: only 13 worms from three foxes belonged to Asian clusters by both EmsB and , whereas 18 worms from nine foxes belonged to different clusters, according to each marker. Cross-fertilization between worms of Asian origin and those from the European Polish population may explain these conflicting results. The presence of clearly Asian elements in the Polish population could be the result of introduction of with host animals (e.g., domestic dogs), or the migration of foxes. In the absence of genetic data from eastern European countries, especially those bordering Poland, it cannot be concluded whether this Asian admixture is typical for a larger area toward central/eastern Europe, or the Polish parasite population is the western extreme of a gradient where both European and Asian elements mingle. Further studies are needed on this subject, preferably using both mitochondrial sequencing and EmsB microsatellite analysis.

摘要

绦虫是一种严重人畜共患病——肺泡型包虫病(AE)的病原体。该寄生虫分布于欧亚大陆北部和北美的广大地区,但AE对人类健康的影响在不同地区差异很大。这种毒力差异的一个假设原因可能是其遗传结构,基于线粒体序列和EmsB微卫星图谱,它形成了四个不同的进化枝。这些进化枝大致对应于它们的起源大陆:亚洲、欧洲和北美,第四个进化枝显然局限于蒙古及周边地区,尽管该进化枝尚未通过EmsB基因分型进行描述。然而,有各种来自“错误”地区的遗传变异记录,例如加拿大西部的“欧洲”单倍型,这可能是宿主动物引入或自然迁移的结果。促使这项研究的一个这样的例子是最近在波兰狐狸体内的蠕虫中记录到“亚洲”线粒体单倍型。当时,这无法通过EmsB微卫星分析得到证实,该方法已被证明在核基因组方面比线粒体标记测序具有更大的鉴别力。因此,对从波兰狐狸身上采集的蠕虫进行了EmsB分析和完整线粒体基因测序,以便将样本分配到欧洲或亚洲集群。基于对来自97只波兰赤狐的349条蠕虫的EmsB分析,92%的蠕虫明显显示出“欧洲型”EmsB图谱,但来自7只狐狸的27条蠕虫(8%)显示出与亚洲起源样本聚类的图谱。根据线粒体序列,来自8只狐狸的总共18条蠕虫属于亚洲单倍型集群。这两种方法并不完全一致:根据EmsB和线粒体序列,只有来自3只狐狸的13条蠕虫属于亚洲集群,而根据每个标记,来自9只狐狸的18条蠕虫属于不同集群。亚洲起源的蠕虫与欧洲波兰种群的蠕虫之间的杂交可能解释了这些相互矛盾的结果。波兰绦虫种群中明显存在亚洲元素可能是由于与宿主动物(如家养狗)一起引入绦虫,或者是狐狸的迁移。由于缺乏来自东欧国家,特别是与波兰接壤国家的遗传数据,无法得出这种亚洲混合成分对于中欧/东欧更大区域是否典型,或者波兰寄生虫种群是否是欧洲和亚洲元素混合梯度的最西端。需要对这个问题进行进一步研究,最好同时使用线粒体测序和EmsB微卫星分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cca/7843918/9ce0e19afe91/fvets-07-620722-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cca/7843918/d8c3e4b99b21/fvets-07-620722-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cca/7843918/9ce0e19afe91/fvets-07-620722-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cca/7843918/d8c3e4b99b21/fvets-07-620722-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cca/7843918/9ce0e19afe91/fvets-07-620722-g0002.jpg

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