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全面的基因组学描绘了辅助基因,这些基因编码致病性和生物膜决定因素在 中。

Comprehensive genomics depict accessory genes encoding pathogenicity and biofilm determinants in .

机构信息

Cholera & Biofilm Research Laboratory, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram 695 014, Kerala, India.

Distributed Information Sub-Centre, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram 695 014, Kerala, India.

出版信息

Future Microbiol. 2021 Feb;16(3):175-184. doi: 10.2217/fmb-2020-0111. Epub 2021 Feb 2.

Abstract

is a leading nosocomial pathogen in biofilm-associated polymicrobial infections. The study aims to understand pathogenicity and biofilm determinants of the pathogen by genome analysis. Genome sequencing of a strong biofilm forming clinical isolate SK460 devoid of Fsr quorum-signaling system, was performed and comparative genomics was carried out among a set of pathogenic biofilm formers and nonpathogenic weak biofilm formers. Analysis revealed a pool of virulence and adhesion related factors associated with pathogenicity. Absence of CRISPR-Cas system facilitated acquisition of pheromone responsive plasmid, pathogenicity island and phages. Comprehensive analysis identified a subset of accessory genes encoding polysaccharide lyase, sugar phosphotransferase system, phage proteins and transcriptional regulators exclusively in pathogenic biofilm formers. The study identified a set of genes specific to pathogenic biofilm formers and these can act as targets which in turn help to develop future treatment endeavors against enterococcal infections.

摘要

是生物膜相关多微生物感染中主要的医院病原体。本研究旨在通过基因组分析来了解病原体的致病性和生物膜决定因素。对缺乏 Fsr 群体感应系统的强生物膜形成临床分离株 SK460 进行了基因组测序,并在一组致病性生物膜形成菌和非致病性弱生物膜形成菌之间进行了比较基因组学研究。分析揭示了与致病性相关的一组毒力和粘附相关因子。CRISPR-Cas 系统的缺失促进了信息素反应质粒、致病性岛和噬菌体的获取。全面分析确定了一组编码多糖裂解酶、糖磷酸转移酶系统、噬菌体蛋白和转录调节因子的辅助基因子集,这些基因仅在致病性生物膜形成菌中存在。该研究确定了一组与致病性生物膜形成菌特异性相关的基因,这些基因可以作为靶点,从而有助于开发针对肠球菌感染的未来治疗方法。

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