National Glycoengineering Research Center, State Key Laboratory of Microbial Technology, Shandong University, 72 Binhai Dadao, Qingdao, 266237, People's Republic of China.
School of Chemistry and Molecular Biosciences, Faculty of Science, The University of Queensland, St Lucia, Australia.
Microb Cell Fact. 2021 Feb 2;20(1):32. doi: 10.1186/s12934-021-01526-1.
Natural glycolysis encounters the decarboxylation of glucose partial oxidation product pyruvate into acetyl-CoA, where one-third of the carbon is lost at CO. We previously constructed a carbon saving pathway, EP-bifido pathway by combining Embden-Meyerhof-Parnas Pathway, Pentose Phosphate Pathway and "bifid shunt", to generate high yield acetyl-CoA from glucose. However, the carbon conversion rate and reducing power of this pathway was not optimal, the flux ratio of EMP pathway and pentose phosphate pathway (PPP) needs to be precisely and dynamically adjusted to improve the production of mevalonate (MVA).
Here, we finely tuned the glycolytic flux ratio in two ways. First, we enhanced PPP flux for NADPH supply by replacing the promoter of zwf on the genome with a set of different strength promoters. Compared with the previous EP-bifido strains, the zwf-modified strains showed obvious differences in NADPH, NADH, and ATP synthesis levels. Among them, strain BP10BF accumulated 11.2 g/L of MVA after 72 h of fermentation and the molar conversion rate from glucose reached 62.2%. Second, pfkA was finely down-regulated by the clustered regularly interspaced short palindromic repeats interference (CRISPRi) system. The MVA yield of the regulated strain BiB1F was 8.53 g/L, and the conversion rate from glucose reached 68.7%.
This is the highest MVA conversion rate reported in shaken flask fermentation. The CRISPRi and promoter fine-tuning provided an effective strategy for metabolic flux redistribution in many metabolic pathways and promotes the chemicals production.
自然糖酵解会遇到葡萄糖部分氧化产物丙酮酸的脱羧,生成乙酰辅酶 A,其中三分之一的碳以 CO 的形式丢失。我们之前构建了一条碳节约途径,即 EP-双歧途径,该途径结合了 EMP 途径、磷酸戊糖途径和“双歧支路”,从葡萄糖生成高产量的乙酰辅酶 A。然而,该途径的碳转化率和还原力并不理想,EMP 途径和磷酸戊糖途径(PPP)的通量比需要精确和动态地调整,以提高甲羟戊酸(MVA)的产量。
在这里,我们通过两种方式精细调整了糖酵解通量比。首先,我们通过用一组不同强度的启动子替换基因组上 zwf 的启动子来增强 PPP 通量以提供 NADPH。与之前的 EP-双歧菌株相比,zwf 修饰菌株在 NADPH、NADH 和 ATP 合成水平上表现出明显差异。其中,BP10BF 菌株在 72 小时发酵后积累了 11.2 g/L 的 MVA,葡萄糖的摩尔转化率达到 62.2%。其次,pfkA 被 CRISPRi 系统精细下调。调控菌株 BiB1F 的 MVA 产量为 8.53 g/L,葡萄糖转化率达到 68.7%。
这是在摇瓶发酵中报道的最高 MVA 转化率。CRISPRi 和启动子精细调控为许多代谢途径中的代谢通量重新分配提供了有效的策略,促进了化学品的生产。