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DNA 点突变中的量子和经典效应:AT 和 GC 碱基对中的 Watson-Crick 互变异构。

Quantum and classical effects in DNA point mutations: Watson-Crick tautomerism in AT and GC base pairs.

机构信息

Leverhulme Quantum Biology Doctoral Training Centre, UK.

Department of Physics, University of Surrey, Guildford, GU2 7XH, UK.

出版信息

Phys Chem Chem Phys. 2021 Feb 25;23(7):4141-4150. doi: 10.1039/d0cp05781a.

Abstract

Proton transfer along the hydrogen bonds of DNA can lead to the creation of short-lived, but biologically relevant point mutations that can further lead to gene mutation and, potentially, cancer. In this work, the energy landscape of the canonical A-T and G-C base pairs (standard, amino-keto) to tautomeric A*-T* and G*-C* (non-standard, imino-enol) Watson-Crick DNA base pairs is modelled with density functional theory and machine-learning nudge-elastic band methods. We calculate the energy barriers and tunnelling rates of hydrogen transfer between and within each base monomer (A, T, G and C). We show that the role of tunnelling in A-T tautomerisation is statistically unlikely due to the presence of a small reverse reaction barrier. On the contrary, the thermal populations of the G*-C* point mutation could be non-trivial and propagate through the replisome. For the direct intramolecular transfer, the reaction is hindered by a substantial energy barrier. However, our calculations indicate that tautomeric bases in their monomeric form have remarkably long lifetimes.

摘要

质子沿着 DNA 氢键的转移可能导致短暂但具有生物学相关性的点突变,这些突变可能进一步导致基因突变,并可能导致癌症。在这项工作中,我们使用密度泛函理论和机器学习 nudged-elastic 带方法对标准的 A-T 和 G-C 碱基对(标准的氨基酮型)到非标准的 A*-T和 G-C*(互变异构的亚氨基烯醇型)沃森克里克 DNA 碱基对的能量景观进行了建模。我们计算了每个碱基单体(A、T、G 和 C)之间和内部氢键转移的能量势垒和隧穿率。我们表明,由于存在小的反向反应势垒,氢键在 A-T 互变异构中的隧穿作用在统计学上是不可能的。相反,G*-C*点突变的热种群可能很重要,并通过复制体传播。对于直接的分子内转移,反应受到很大的能垒阻碍。然而,我们的计算表明,单体形式的互变异构碱基具有非常长的寿命。

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