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基于基本生化原理的工程微生物群落动力学框架。

A framework based on fundamental biochemical principles to engineer microbial community dynamics.

机构信息

James Watt School of Engineering, Infrastructure and Environment Research Division, University of Glasgow, Rankine Building, Glasgow, G12 8LT, UK.

James Watt School of Engineering, Infrastructure and Environment Research Division, University of Glasgow, Rankine Building, Glasgow, G12 8LT, UK.

出版信息

Curr Opin Biotechnol. 2021 Feb;67:111-118. doi: 10.1016/j.copbio.2021.01.001. Epub 2021 Feb 1.

Abstract

Microbial communities are complex but there are basic principles we can apply to constrain the assumed stochasticity of their activity. By understanding the trade-offs behind the kinetic parameters that define microbial growth, we can explain how local interspecies dependencies arise and shape the emerging properties of a community. If we integrate these theoretical descriptions with experimental 'omics' data and bioenergetics analysis of specific environmental conditions, predictions on activity, assembly and spatial structure can be obtained reducing the a priori unpredictable complexity of microbial communities. This information can be used to define the appropriate selective pressures to engineer bioprocesses and propose new hypotheses which can drive experimental research to accelerate innovation in biotechnology.

摘要

微生物群落非常复杂,但我们可以应用一些基本原则来限制其活动的随机性。通过了解定义微生物生长的动力学参数背后的权衡,我们可以解释种间相互依赖关系如何产生,并塑造群落的新兴特性。如果我们将这些理论描述与特定环境条件的实验“组学”数据和生物能量学分析相结合,就可以对活性、组装和空间结构进行预测,从而减少微生物群落中先验不可预测的复杂性。这些信息可用于定义适当的选择压力来设计生物工艺,并提出新的假设,从而推动实验研究,加速生物技术的创新。

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