Ozsvar Jazmin, Tarakanova Anna, Wang Richard, Buehler Markus J, Weiss Anthony S
Charles Perkins Centre, the University of Sydney, 2006 Sydney, NSW, Australia.
School of Life and Environmental Sciences, The University of Sydney, 2006 Sydney, NSW, Australia.
Matrix Biol Plus. 2019 Mar 12;2:100002. doi: 10.1016/j.mbplus.2019.03.001. eCollection 2019 May.
Elastin provides elastic tissues with resilience through stretch and recoil cycles, and is primarily made of its extensively cross-linked monomer, tropoelastin. Here, we leverage the recently published full atomistic model of tropoelastin to assess how allysine modifications, which are essential to cross-linking, contribute to the dynamics and structural changes that occur in tropoelastin in the context of elastin assembly. We used replica exchange molecular dynamics to generate structural ensembles of allysine containing tropoelastin. We conducted principal component analysis on these ensembles and found that the molecule departs from the canonical structural ensemble. Furthermore, we showed that, while the canonical scissors-twist movement was retained, new movements emerged that deviated from those of the wild type protein, providing evidence for the involvement of a variety of molecular motions in elastin assembly. Additionally, we highlighted secondary structural changes and linked these perturbations to the longevity of specific salt bridges. We propose a model where allysines in tropoelastin contribute to hierarchical elastin assembly through global and local perturbations to molecular structure and dynamics.
弹性蛋白通过拉伸和回缩循环赋予弹性组织弹性,并且主要由其广泛交联的单体原弹性蛋白构成。在此,我们利用最近发表的原弹性蛋白全原子模型来评估对交联至关重要的赖氨醛修饰如何促成在弹性蛋白组装背景下原弹性蛋白中发生的动力学和结构变化。我们使用副本交换分子动力学来生成含有赖氨醛的原弹性蛋白的结构系综。我们对这些系综进行主成分分析,发现该分子偏离了典型结构系综。此外,我们表明,虽然保留了典型的剪刀扭转运动,但出现了偏离野生型蛋白质运动的新运动,这为多种分子运动参与弹性蛋白组装提供了证据。此外,我们突出了二级结构变化,并将这些扰动与特定盐桥的寿命联系起来。我们提出了一个模型,其中原弹性蛋白中的赖氨醛通过对分子结构和动力学的全局和局部扰动来促进分级弹性蛋白组装。