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线虫中转座子 Tc1-mariner 的基因组调查表明存在广泛的水平转座子转移事件。

A genomic survey of Tc1-mariner transposons in nematodes suggests extensive horizontal transposon transfer events.

机构信息

Dipartimento di Biologia, Università degli Studi di Bari "Aldo Moro", Bari, Italy.

Dipartimento di Scienze Biomediche ed Oncologia Umana (DIMO), Università degli Studi di Bari "Aldo Moro", Bari, Italy.

出版信息

Mol Phylogenet Evol. 2021 May;158:107090. doi: 10.1016/j.ympev.2021.107090. Epub 2021 Feb 2.

DOI:10.1016/j.ympev.2021.107090
PMID:33545274
Abstract

The number of reports concerning horizontal transposon transfers (HTT) in metazoan species is considerably increased, alongside with the exponential growth of genomic sequence data However, our understanding of the mechanisms of such phenomenon is still at an early stage. Nematodes constitute an animal phylum successfully adapted to almost every ecosystem and for this reason could potentially contribute to spreading the genetic information through horizontal transfer. To date, few studies describe HTT of nematode retrotransposons. This is due to the lack of annotation of transposable elements in the sequenced nematode genomes, especially DNA transposons, which are acknowledged as the best horizontal travelers among mobile sequences. We have therefore started a survey of DNA transposons and their possible involvement in HTT in sequenced nematode genomes. Here, we describe 83 new Tc1/mariner elements distributed in 17 nematode species. Among them, nine families were possibly horizontally transferred between nematodes and the most diverse animal species, including ants as preferred partner of HTT. The results obtained suggest that HTT events involving nematodes Tc1/mariner elements are not uncommon, and that nematodes could have a possible role as transposon reservoir that, in turn, can be redistributed among animal genomes. Overall, this could be relevant to understand how the inter-species genetic flows shape the landscape of genetic variation of organisms inhabiting specific environmental communities.

摘要

有关后生动物物种中横向转座子转移 (HTT) 的报告数量显著增加,同时基因组序列数据也呈指数级增长。然而,我们对这种现象的机制的理解仍处于早期阶段。线虫是一个成功适应几乎所有生态系统的动物门,因此它们有可能通过水平转移传播遗传信息。迄今为止,很少有研究描述线虫逆转座子的 HTT。这是由于在测序的线虫基因组中缺乏转座元件的注释,特别是 DNA 转座子,它们被认为是移动序列中最好的水平旅行者。因此,我们开始调查 DNA 转座子及其在测序的线虫基因组中可能参与的 HTT。在这里,我们描述了分布在 17 种线虫物种中的 83 个新的 Tc1/mariner 元件。其中,有九个家族可能在线虫和最多样化的动物物种之间发生了水平转移,包括蚂蚁,它们是 HTT 的首选伙伴。所得结果表明,涉及线虫 Tc1/mariner 元件的 HTT 事件并不罕见,线虫可能具有作为转座子库的可能作用,而转座子库又可以在动物基因组之间重新分配。总的来说,这对于理解种间遗传流动如何塑造特定环境群落中生物遗传变异的景观可能是相关的。

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