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播散性淋球菌感染并发人工关节感染:病例报告及基因组和系统发育分析

Disseminated Gonococcal Infection Complicated by Prosthetic Joint Infection: Case Report and Genomic and Phylogenetic Analysis.

作者信息

Ogbebor Osakpolor, Mortimer Tatum D, Fryling Kyra, Zhang Jessica J, Bhanot Nitin, Grad Yonatan H

机构信息

Division of Infectious Diseases, Allegheny General Hospital, Allegheny Health Network, Pittsburgh, Pennsylvania, USA.

Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.

出版信息

Open Forum Infect Dis. 2020 Dec 18;8(2):ofaa632. doi: 10.1093/ofid/ofaa632. eCollection 2021 Feb.

DOI:10.1093/ofid/ofaa632
PMID:33553473
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7850131/
Abstract

infections have been increasing globally, with prevalence rising across age groups. In this study, we report a case of disseminated gonococcal infection (DGI) involving a prosthetic joint, and we use whole-genome sequencing to characterize resistance genes, putative virulence factors, and the phylogenetic lineage of the infecting isolate. We review the literature on sequence-based prediction of antibiotic resistance and factors that contribute to risk for DGI. We argue for routine sequencing and reporting of invasive gonococcal infections to aid in determining whether an invasive gonococcal infection is sporadic or part of an outbreak and to accelerate understanding of the genetic features of that contribute to pathogenesis.

摘要

全球范围内感染情况一直在增加,各年龄组的患病率都在上升。在本研究中,我们报告了一例累及人工关节的播散性淋球菌感染(DGI)病例,并使用全基因组测序来鉴定耐药基因、假定的毒力因子以及感染菌株的系统发育谱系。我们回顾了基于序列预测抗生素耐药性以及导致DGI风险的因素的文献。我们主张对侵袭性淋球菌感染进行常规测序和报告,以帮助确定侵袭性淋球菌感染是散发性的还是暴发的一部分,并加速对导致发病机制的基因特征的了解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7f7/7850131/c0152f683543/ofaa632_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7f7/7850131/c0152f683543/ofaa632_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7f7/7850131/c0152f683543/ofaa632_fig1.jpg

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本文引用的文献

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2
Evaluation of the SpeeDx ResistancePlus® GC and SpeeDx GC 23S 2611 (beta) molecular assays for prediction of antimicrobial resistance/susceptibility to ciprofloxacin and azithromycin in Neisseria gonorrhoeae.评估 SpeeDx ResistancePlus® GC 和 SpeeDx GC 23S 2611(beta)分子检测法对淋病奈瑟菌中环丙沙星和阿奇霉素的抗菌药物耐药/敏感性的预测作用。
J Antimicrob Chemother. 2021 Jan 1;76(1):84-90. doi: 10.1093/jac/dkaa381.
3
用于淋病奈瑟菌全基因组测序分析的生物信息学工具:文献综述。
Brief Funct Genomics. 2022 Apr 11;21(2):78-89. doi: 10.1093/bfgp/elab028.
High precision variant and antimicrobial resistance calling from metagenomic Nanopore sequencing.
宏基因组纳米孔测序的高精度变异体和抗菌药物耐药性检测。
Genome Res. 2020 Sep;30(9):1354-1363. doi: 10.1101/gr.262865.120. Epub 2020 Sep 1.
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