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穗花杉双黄酮的量子计算研究与分子对接研究

Quantum computational investigations and molecular docking studies on amentoflavone.

作者信息

Marinho Márcia M, Almeida-Neto Francisco Wagner Q, Marinho Emanuelle M, da Silva Leonardo P, Menezes Ramon R P P B, Dos Santos Ricardo P, Marinho Emmanuel S, de Lima-Neto Pedro, Martins Alice M C

机构信息

Departamento de Análises Clínicas e Toxicológicas, Centro de Ciências da Saúde, Universidade Federal do Ceará, Campus Porangabussu, 60430-370, Fortaleza, Ceará, Brazil.

Departamento de Química Analítica e Físico-Química, Centro de Ciências, Universidade Federal do Ceará, Campus do Pici, Bloco 940, 60440-900, Fortaleza, Ceará, Brazil.

出版信息

Heliyon. 2021 Jan 30;7(1):e06079. doi: 10.1016/j.heliyon.2021.e06079. eCollection 2021 Jan.

Abstract

Chagas disease is a neglected tropical disease caused by the protozoan parasite , with approximately 6-7 million people infected worldwide, becoming a public health problem in tropical countries, thus generating an increasing demand for the development of more effective drugs, due to the low efficiency of the existing drugs. Aiming at the development of a new antichagasic pharmacological tool, the density functional theory was used to calculate the reactivity descriptors of amentoflavone, a biflavonoid with proven anti-trypanosomal activity in vitro, as well as to perform a study of interactions with the enzyme cruzain, an enzyme key in the evolutionary process of . Structural properties (in solvents with different values of dielectric constant), the infrared spectrum, the frontier orbitals, Fukui analysis, thermodynamic properties were the parameters calculated from DFT method with the monomeric structure of the apigenin used for comparison. Furthermore, molecular docking studies were performed to assess the potential use of this biflavonoid as a pharmacological antichagasic tool. The frontier orbitals (HOMO-LUMO) study to find the band gap of compound has been extended to calculate electron affinity, ionization energy, electronegativity electrophilicity index, chemical potential, global chemical hardness and global chemical softness to study the chemical behaviour of compound. The optimized structure was subjected to molecular Docking to characterize the interaction between amentoflavone and cruzain enzyme, a classic pharmacological target for substances with anti-gas activity, where significant interactions were observed with amino acid residues from each one's catalytic sites enzyme. These results suggest that amentoflavone has the potential to interfere with the enzymatic activity of cruzain, thus being an indicative of being a promising antichagasic agent.

摘要

恰加斯病是一种由原生动物寄生虫引起的被忽视的热带病,全球约有600万至700万人感染,在热带国家成为一个公共卫生问题,由于现有药物效率低下,因此对开发更有效药物的需求日益增加。为了开发一种新的抗恰加斯病药理学工具,采用密度泛函理论计算了amentoflavone(一种在体外具有已证实的抗锥虫活性的双黄酮)的反应性描述符,并对其与克鲁斯蛋白酶(一种在[此处信息缺失]进化过程中的关键酶)的相互作用进行了研究。结构性质(在具有不同介电常数值的溶剂中)、红外光谱、前沿轨道、福井分析、热力学性质是使用芹菜素单体结构作为比较,通过密度泛函理论方法计算的参数。此外,还进行了分子对接研究,以评估这种双黄酮作为抗恰加斯病药理学工具的潜在用途。为了研究化合物的化学行为,对前沿轨道(最高占据分子轨道-最低未占据分子轨道)进行研究以找到化合物的带隙,并扩展到计算电子亲和能、电离能、电负性、亲电指数、化学势、全局化学硬度和全局化学软度。对优化后的结构进行分子对接,以表征amentoflavone与克鲁斯蛋白酶之间的相互作用,克鲁斯蛋白酶是具有抗恰加斯病活性物质的经典药理学靶点,在该靶点处观察到与酶各自催化位点的氨基酸残基有显著相互作用。这些结果表明,amentoflavone有可能干扰克鲁斯蛋白酶的酶活性,因此表明它是一种有前景的抗恰加斯病药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82b1/7851790/998ce76869d6/gr1.jpg

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