SARDI Aquatic Sciences, West Beach, SA, Australia.
School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, Australia.
PLoS One. 2021 Feb 8;16(2):e0246734. doi: 10.1371/journal.pone.0246734. eCollection 2021.
Growth modelling is a fundamental component of fisheries assessments but is often hindered by poor quality data from biased sampling. Several methods have attempted to account for sample bias in growth analyses. However, in many cases this bias is not overcome, especially when large individuals are under-sampled. In growth models, two key parameters have a direct biological interpretation: L0, which should correspond to length-at-birth and L∞, which should approximate the average length of full-grown individuals. Here, we present an approach of fitting Bayesian growth models using Markov Chain Monte Carlo (MCMC), with informative priors on these parameters to improve the biological plausibility of growth estimates. A generalised framework is provided in an R package 'BayesGrowth', which removes the hurdle of programming an MCMC model for new users. Four case studies representing different sampling scenarios as well as three simulations with different selectivity functions were used to compare this Bayesian framework to standard frequentist growth models. The Bayesian models either outperformed or matched the results of frequentist growth models in all examples, demonstrating the broad benefits offered by this approach. This study highlights the impact that Bayesian models could provide in age and growth studies if applied more routinely rather than being limited to only complex or sophisticated applications.
生长建模是渔业评估的基本组成部分,但通常受到来自有偏采样的低质量数据的阻碍。有几种方法试图在生长分析中考虑样本偏差。然而,在许多情况下,这种偏差并没有得到克服,特别是当大个体被抽样不足时。在生长模型中,有两个关键参数具有直接的生物学解释:L0,它应该对应于出生时的长度,而 L∞,它应该接近完全生长个体的平均长度。在这里,我们提出了一种使用马尔可夫链蒙特卡罗(MCMC)拟合贝叶斯生长模型的方法,对这些参数使用信息先验来提高生长估计的生物学合理性。一个通用框架在 R 包“BayesGrowth”中提供,该框架为新用户省去了编程 MCMC 模型的障碍。我们使用了四个代表不同采样场景的案例研究和三个具有不同选择函数的模拟来比较这种贝叶斯框架与标准频率生长模型。在所有示例中,贝叶斯模型要么表现优于,要么与频率生长模型的结果相匹配,这表明了这种方法的广泛优势。本研究强调了如果更常规地应用贝叶斯模型而不是仅限于复杂或复杂的应用,它们可以在年龄和生长研究中提供的影响。