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在低离子强度下带电 DNA 病毒棒悬液的平衡相图和热响应。

Equilibrium phase diagram and thermal responses of charged DNA-virus rod-suspensions at low ionic strengths.

机构信息

Institute of Biological Information Processing, IBI-4, Biomacromolecular Systems and Processes, Forschungszentrum Jülich, Jülich, Germany.

出版信息

Sci Rep. 2021 Feb 10;11(1):3472. doi: 10.1038/s41598-021-82653-y.

Abstract

The collective behavior of DNA is important for exploring new types of bacteria in the means of detection, which is greatly interested in the understanding of interactions between DNAs in living systems. How they self-organize themselves is a physical common phenomenon for broad ranges of thermodynamic systems. In this work, the equilibrium phase diagrams of charged chiral rods (fd viruses) at low ionic strengths (below a few mM) are provided to demonstrate both replicas of (or self-organized) twist orders and replica symmetry breaking near high concentration glass-states. By varying the ionic strengths, it appears that a critical ionic strength is obtained below 1-2 mM salt, where the twist and freezing of nematic domains diverge. Also, the microscopic relaxation is revealed by the ionic strength-dependent effective Debye screening length. At a fixed low ionic strength, the local orientations of twist are shown by two different length scales of optical pitch, in the chiral-nematic N* phase and the helical domains [Formula: see text], for low and high concentration, respectively. RSB occurs in several cases of crossing phase boundary lines in the equilibrium phase diagram of DNA-rod concentration and ionic strength, including long-time kinetic arrests in the presence of twist orders. The different pathways of PATH I, II and III are due to many-body effects of randomized orientations for charged fd rods undergoing long-range electrostatic interactions in bulk elastic medium. In addition, the thermal stability are shown for chiral pitches of the N* phase and the abnormal cooling process of a specific heat in a structural glass. Here, the concentration-driven twist-effects of charged DNA rods are explored using various experimental methods involving image-time correlation, microscopic dynamics in small angle dynamic light scattering, optical activity in second harmonic generation, and differential scanning calorimetry for the glass state.

摘要

DNA 的集体行为对于探索新型细菌的检测方法很重要,这对于理解活系统中 DNA 之间的相互作用非常感兴趣。它们如何自我组织是广泛热力学系统的物理常见现象。在这项工作中,提供了带电手性棒(fd 病毒)在低离子强度(低于几毫摩尔)下的平衡相图,以证明复制(或自我组织)扭曲顺序和 replica 对称性在高浓度玻璃态附近的断裂。通过改变离子强度,可以看出在低于 1-2 mM 盐的情况下获得了一个临界离子强度,在该强度下,扭曲和向列域的冻结发散。此外,微观弛豫通过离子强度依赖的有效德拜屏蔽长度来揭示。在固定的低离子强度下,通过两种不同的光学螺距长度尺度显示出扭曲的局部取向,分别在手性向列 N相和螺旋域[Formula: see text]中,对于低浓度和高浓度。在 DNA-棒浓度和离子强度的平衡相图中,包括在存在扭曲顺序时的长时间动力学停滞,在几个交叉相边界线的情况下发生了 replica 对称性破坏。路径 I、II 和 III 的不同途径是由于带电 fd 棒在体弹性介质中经历长程静电相互作用时随机取向的多体效应。此外,还展示了 N相的手性螺距和结构玻璃中比热的异常冷却过程的热稳定性。在这里,使用涉及图像时间相关、小角动态光散射中的微观动力学、二次谐波产生中的旋光性以及玻璃态的差示扫描量热法的各种实验方法探索了带电 DNA 棒的浓度驱动的扭曲效应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8df/7876043/0a1f0dbc753b/41598_2021_82653_Fig1_HTML.jpg

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