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使用DNA适配体通过肉眼进行快速检测。

Rapid Detection of by the Naked Eye Using DNA Aptamers.

作者信息

Wu Hangjie, Gu Lide, Ma Xiaoyi, Tian Xueqing, Fan Shihui, Qin Mingcan, Lu Jing, Lyu Mingsheng, Wang Shujun

机构信息

Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang 222005, PR China.

Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang 222005, PR China.

出版信息

ACS Omega. 2021 Jan 21;6(5):3771-3779. doi: 10.1021/acsomega.0c05374. eCollection 2021 Feb 9.

Abstract

was first isolated from gastritis patients by Barry J. Marshall and J. Robin Warren in 1982, and more than 90% of duodenal ulcers and about 80% of gastric ulcers are caused by infection. Most detection methods require sophisticated instruments and professional operators, making detection slow and expensive. Therefore, it is critical to develop a simple, fast, highly specific, and practical strategy for the detection of . In this study, we used as a target to select unique aptamers that can be used for the detection of . In our study, we used random ssDNA as an initial library to screen nucleic acid aptamers for . We used binding rate and the fluorescence intensity to identify candidate aptamers. One DNA aptamer, named HPA-2, was discovered through six rounds of positive selection and three rounds of negative selection, and it had the highest affinity constant of all aptamers tested ( = 19.3 ± 3.2 nM). This aptamer could be used to detect and showed no specificity for other bacteria. Moreover, we developed a new sensor to detect with the naked eye for 5 min using illumination from a hand-held flashlight. Our study provides a framework for the development of other aptamer-based methods for the rapid detection of pathogenic bacteria.

摘要

1982年,巴里·J·马歇尔和J·罗宾·沃伦首次从胃炎患者中分离出幽门螺旋杆菌,超过90%的十二指肠溃疡和约80%的胃溃疡是由幽门螺旋杆菌感染引起的。大多数检测方法需要精密仪器和专业操作人员,导致检测速度慢且成本高。因此,开发一种简单、快速、高特异性且实用的幽门螺旋杆菌检测策略至关重要。在本研究中,我们以幽门螺旋杆菌为靶点筛选可用于检测幽门螺旋杆菌的独特适配体。在我们的研究中,我们使用随机单链DNA作为初始文库来筛选针对幽门螺旋杆菌的核酸适配体。我们利用结合率和荧光强度来鉴定候选适配体。通过六轮阳性筛选和三轮阴性筛选发现了一种名为HPA - 2的DNA适配体,它在所测试的所有适配体中具有最高的亲和常数(Kd = 19.3 ± 3.2 nM)。这种适配体可用于检测幽门螺旋杆菌,且对其他细菌无特异性。此外,我们开发了一种新的传感器,使用手持手电筒照明,5分钟内即可肉眼检测幽门螺旋杆菌。我们的研究为开发其他基于适配体的病原菌快速检测方法提供了框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3302/7876845/a1be1c42c895/ao0c05374_0002.jpg

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