Department of Medicinal Chemistry, Maj Institute of Pharmacology, Polish Academy of Sciences, Smetna 12, 31-343 Kraków, Poland; Faculty of Chemistry Jagiellonian University, Gronostajowa 2, 30-387 Kraków, Poland.
Department of Medicinal Chemistry, Maj Institute of Pharmacology, Polish Academy of Sciences, Smetna 12, 31-343 Kraków, Poland; Faculty of Mathematical and Natural Sciences, University of Applied Sciences in Tarnów, Mickiewicza 8, 33-100 Tarnów, Poland.
Spectrochim Acta A Mol Biomol Spectrosc. 2021 May 5;252:119536. doi: 10.1016/j.saa.2021.119536. Epub 2021 Feb 3.
Hydrogen bonds (HBs) directly engaging fluorine has been extensively studied, but the indirect effect of fluorine on adjacent donors and acceptors is poorly understood and still difficult to predict. The indirect and direct effect of the fluorination of aniline on HB patterns observed in monofluoroanilines was studied via experimental (vibrational spectroscopy and crystal structure analysis) and theoretical (ab initio molecular dynamics and electrostatic surface potential) methods. It was found that a fluorine substituent decreases the strength and frequency of N-H⋯N HBs and, at the same time, increases the acidity of CH protons, enhancing the competitiveness of weaker interactions. Additionally, the position of fluorine in the aromatic ring strongly affects the C-F bond length, and a direct intramolecular N-H⋯F HB causes an increase in the N-H bond stability. We also provide a methodology to identify and separate individual HBs concerning the type of donor or acceptor from the ab initio molecular dynamics trajectories.
氢键(HBs)直接与氟结合的情况已经得到了广泛的研究,但氟对相邻供体和受体的间接影响还了解甚少,并且仍然难以预测。通过实验(振动光谱和晶体结构分析)和理论(从头算分子动力学和静电表面势能)方法研究了苯胺氟化对单氟苯胺中观察到的 HB 模式的间接和直接影响。结果发现,氟取代基降低了 N-H⋯N HBs 的强度和频率,同时增加了 CH 质子的酸性,增强了较弱相互作用的竞争力。此外,芳环中氟的位置强烈影响 C-F 键长,并且分子内 N-H⋯F HB 导致 N-H 键稳定性增加。我们还提供了一种从从头算分子动力学轨迹中识别和分离单个涉及供体或受体类型的 HBs 的方法。