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基因组序列揭示了海马进化过程中的全球扩散路线,并表明存在趋同的遗传适应。

Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution.

作者信息

Li Chunyan, Olave Melisa, Hou Yali, Qin Geng, Schneider Ralf F, Gao Zexia, Tu Xiaolong, Wang Xin, Qi Furong, Nater Alexander, Kautt Andreas F, Wan Shiming, Zhang Yanhong, Liu Yali, Zhang Huixian, Zhang Bo, Zhang Hao, Qu Meng, Liu Shuaishuai, Chen Zeyu, Zhong Jia, Zhang He, Meng Lingfeng, Wang Kai, Yin Jianping, Huang Liangmin, Venkatesh Byrappa, Meyer Axel, Lu Xuemei, Lin Qiang

机构信息

CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Innovation Academy of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences, Guangzhou, China.

Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China.

出版信息

Nat Commun. 2021 Feb 17;12(1):1094. doi: 10.1038/s41467-021-21379-x.

Abstract

Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet, seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific habitats, such as seagrass, kelp or coral reefs, lack pelvic and caudal fins, and give birth to directly developed offspring without pronounced pelagic larval stage, rendering long-range dispersal by conventional means inefficient. Here we investigate seahorses' worldwide dispersal and biogeographic patterns based on a de novo genome assembly of Hippocampus erectus as well as 358 re-sequenced genomes from 21 species. Seahorses evolved in the late Oligocene and subsequent circum-global colonization routes are identified and linked to changing dynamics in ocean currents and paleo-temporal seaway openings. Furthermore, the genetic basis of the recurring "bony spines" adaptive phenotype is linked to independent substitutions in a key developmental gene. Analyses thus suggest that rafting via ocean currents compensates for poor dispersal and rapid adaptation facilitates colonizing new habitats.

摘要

海马分布于全球热带至温带沿海水域。然而,海马表现出许多适应久坐、隐秘生活方式的特征:它们需要特定的栖息地,如海藻床、海带或珊瑚礁,没有腹鳍和尾鳍,且直接产出发育完全的后代,没有明显的浮游幼虫阶段,这使得通过传统方式进行远距离扩散效率低下。在此,我们基于对直立海马的从头基因组组装以及来自21个物种的358个重测序基因组,研究了海马在全球范围内的扩散和生物地理模式。海马在渐新世晚期进化,随后确定了其全球殖民路线,并将其与洋流和古海洋通道开口的动态变化联系起来。此外,反复出现的“骨棘”适应性表型的遗传基础与一个关键发育基因中的独立替换有关。因此,分析表明,通过洋流漂浮弥补了扩散能力的不足,而快速适应则有助于在新栖息地定殖。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/393c/7889852/83b6dfcfa59b/41467_2021_21379_Fig1_HTML.jpg

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