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非典型应答调节蛋白和 ClpXP 接头蛋白 RssB 在一般应激反应中的磷酸化依赖信号转导。

Phospho-dependent signaling during the general stress response by the atypical response regulator and ClpXP adaptor RssB.

机构信息

Department of Molecular Biology, Cell Biology and Biochemistry, Laboratories of Molecular Medicine Brown University, Providence, Rhode Island, USA.

出版信息

Protein Sci. 2021 Apr;30(4):899-907. doi: 10.1002/pro.4047. Epub 2021 Mar 1.

DOI:10.1002/pro.4047
PMID:33599047
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7980512/
Abstract

In the model organism Escherichia coli and related species, the general stress response relies on tight regulation of the intracellular levels of the promoter specificity subunit RpoS. RpoS turnover is exclusively dependent on RssB, a two-domain response regulator that functions as an adaptor that delivers RpoS to ClpXP for proteolysis. Here, we report crystal structures of the receiver domain of RssB both in its unphosphorylated form and bound to the phosphomimic BeF . Surprisingly, we find only modest differences between these two structures, suggesting that truncating RssB may partially activate the receiver domain to a "meta-active" state. Our structural and sequence analysis points to RssB proteins not conforming to either the Y-T coupling scheme for signaling seen in prototypical response regulators, such as CheY, or to the signaling model of the less understood FATGUY proteins.

摘要

在模式生物大肠杆菌和相关物种中,一般应激反应依赖于严格调节启动子特异性亚基 RpoS 的细胞内水平。RpoS 的周转完全依赖于 RssB,这是一种具有两个结构域的响应调节蛋白,作为一种衔接蛋白,将 RpoS 递送给 ClpXP 进行蛋白水解。在这里,我们报告了 RssB 的受体结构域的晶体结构,分别处于非磷酸化形式和与磷酸模拟物 BeF 结合的形式。令人惊讶的是,我们发现这两种结构之间只有微小的差异,这表明截短 RssB 可能会将受体结构域部分激活到“元活性”状态。我们的结构和序列分析表明,RssB 蛋白不符合典型的响应调节剂(如 CheY)中看到的 Y-T 偶联信号方案,也不符合不太了解的 FATGUY 蛋白的信号模型。

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本文引用的文献

1
RssB-mediated σ Activation is Regulated by a Two-Tier Mechanism via Phosphorylation and Adaptor Protein - IraD.RssB 介导的 σ 激活受磷酸化和衔接蛋白 - IraD 的双重机制调节。
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Modulation of Response Regulator CheY Reaction Kinetics by Two Variable Residues That Affect Conformation.通过影响构象的两个可变残基调节应答调节子 CheY 的反应动力学。
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Insight into the RssB-Mediated Recognition and Delivery of σ to the AAA+ Protease, ClpXP.深入了解 RssB 介导的 σ 向 AAA+ 蛋白酶 ClpXP 的识别和输送。
Biomolecules. 2020 Apr 16;10(4):615. doi: 10.3390/biom10040615.
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Trouble is coming: Signaling pathways that regulate general stress responses in bacteria.麻烦来了:调节细菌普遍应激反应的信号通路。
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Structural basis for inhibition of a response regulator of σ stability by a ClpXP antiadaptor.结构基础:ClpXP 反适应体抑制 σ 稳定性调节子。
Genes Dev. 2019 Jun 1;33(11-12):718-732. doi: 10.1101/gad.320168.118. Epub 2019 Apr 11.
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The Pfam protein families database in 2019.2019 年 Pfam 蛋白质家族数据库。
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Conformational dynamism for DNA interaction in the Salmonella RcsB response regulator.沙门氏菌 RcsB 反应调节剂中 DNA 相互作用的构象动态。
Nucleic Acids Res. 2018 Jan 9;46(1):456-472. doi: 10.1093/nar/gkx1164.
9
Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12.大肠杆菌K-12中对不同RpoS水平的全基因组转录反应
J Bacteriol. 2017 Mar 14;199(7). doi: 10.1128/JB.00755-16. Print 2017 Apr 1.
10
Role of the PFXFATG[G/Y] Motif in the Activation of SdrG, a Response Regulator Involved in the Alphaproteobacterial General Stress Response.PFXFATG[G/Y]基序在 SdrG 激活中的作用,SdrG 是参与α变形菌一般应激反应的调控因子。
Structure. 2016 Aug 2;24(8):1237-1247. doi: 10.1016/j.str.2016.05.015. Epub 2016 Jul 7.