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"," 一种来自哥斯达黎加沉积物的新型 Asgard 门微生物,能够降解多糖和进行厌氧甲烷营养作用。

"," a Novel Asgard Phylum from Costa Rican Sediment Capable of Polysaccharide Degradation and Anaerobic Methylotrophy.

机构信息

School of Marine Science and Policy, University of Delaware, Lewes, Delaware, USA.

School of Marine Science and Policy, University of Delaware, Lewes, Delaware, USA

出版信息

Appl Environ Microbiol. 2021 Apr 13;87(9). doi: 10.1128/AEM.02584-20.

Abstract

The Asgard superphylum is a deeply branching monophyletic group of , recently described as some of the closest relatives of the eukaryotic ancestor. The wide application of genomic analyses from metagenome sequencing has established six distinct phyla, whose genomes encode diverse metabolic capacities and which play important biogeochemical and ecological roles in marine sediments. Here, we describe two metagenome-assembled genomes (MAGs) recovered from deep marine sediments off the Costa Rica margin, defining a novel lineage phylogenetically married to " Thorarchaeota"; as such, we propose the name "" for this phylum. The two MAGs encode an anaerobic pathway for methylotrophy enabling the utilization of C to C compounds (methanol and methylamines) to synthesize acetyl coenzyme A (acetyl-CoA). The MAGs showed a remarkable saccharolytic capabilities compared to other Asgard lineages and encoded diverse classes of carbohydrate active enzymes (CAZymes) targeting different mono-, di-, and oligosaccharides. Comparative genomic analysis based on the full metabolic profiles of different Asgard lineages revealed the close relation between and " Odinarchaeota" MAGs, which suggested similar metabolic potentials and ecological roles. Furthermore, we identified multiple HGT events from different bacterial donors within MAGs, which hypothetically expanded capacities for substrate utilization, energy production, and niche adaptation. The exploration of deep marine sediments has unearthed many new lineages of microbes. The finding of this novel phylum of Asgard archaea is important, since understanding the diversity and evolution of Asgard archaea may inform also about the evolution of eukaryotic cells. The comparison of metabolic potentials of the Asgard archaea can help inform about selective pressures the lineages have faced during evolution.

摘要

亚古菌超门是一个分支很深的单系群,最近被描述为真核生物祖先的一些最亲近的亲属。宏基因组测序的基因组分析的广泛应用已经确立了六个不同的门,它们的基因组编码多样化的代谢能力,并在海洋沉积物中发挥重要的生物地球化学和生态作用。在这里,我们描述了从哥斯达黎加边缘深海沉积物中回收的两个宏基因组组装基因组(MAGs),它们在系统发育上与“ Thorarchaeota”有亲缘关系,因此,我们提出了这个门的名称“ ”。这两个 MAG 编码了一种用于甲基营养的厌氧途径,使它们能够利用 C 到 C 化合物(甲醇和甲基胺)合成乙酰辅酶 A(乙酰辅酶 A)。与其他亚古菌谱系相比,MAG 表现出显著的糖化能力,并编码了不同类别的碳水化合物活性酶(CAZymes),针对不同的单糖、二糖和寡糖。基于不同亚古菌谱系的完整代谢谱的比较基因组分析揭示了 和“ Odinarchaeota” MAG 之间的密切关系,这表明它们具有相似的代谢潜力和生态作用。此外,我们在 MAG 中鉴定了来自不同细菌供体的多个 HGT 事件,这假设扩大了它们对底物利用、能量产生和生态位适应的能力。对深海沉积物的探索揭示了许多新的微生物谱系。发现这个新的亚古菌门是重要的,因为了解亚古菌的多样性和进化也可能为真核细胞的进化提供信息。亚古菌的代谢潜力的比较可以帮助了解谱系在进化过程中所面临的选择压力。

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