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乙醇浓度对用于生物多样性研究的昆虫形态和分子保存的影响。

The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies.

作者信息

Marquina Daniel, Buczek Mateusz, Ronquist Fredrik, Łukasik Piotr

机构信息

Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.

Department of Zoology, Stockholm University, Stockholm, Sweden.

出版信息

PeerJ. 2021 Feb 12;9:e10799. doi: 10.7717/peerj.10799. eCollection 2021.

Abstract

Traditionally, insects collected for scientific purposes have been dried and pinned, or preserved in 70% ethanol. Both methods preserve taxonomically informative exoskeletal structures well but are suboptimal for preserving DNA for molecular biology. Highly concentrated ethanol (95-100%), preferred as a DNA preservative, has generally been assumed to make specimens brittle and prone to breaking. However, systematic studies on the correlation between ethanol concentration and specimen preservation are lacking. Here, we tested how preservative ethanol concentration in combination with different sample handling regimes affect the integrity of seven insect species representing four orders, and differing substantially in the level of sclerotization. After preservation and treatments (various levels of disturbance), we counted the number of appendages (legs, wings, antennae, or heads) that each specimen had lost. Additionally, we assessed the preservation of DNA after long-term storage by comparing the ratio of PCR amplicon copy numbers to an added artificial standard. We found that high ethanol concentrations indeed induce brittleness in insects. However, the magnitude and nature of the effect varied strikingly among species. In general, ethanol concentrations at or above 90% made the insects more brittle, but for species with robust, thicker exoskeletons, this did not translate to an increased loss of appendages. Neither freezing the samples nor drying the insects after immersion in ethanol had a negative effect on the retention of appendages. However, the morphology of the insects was severely damaged if they were allowed to dry. We also found that DNA preserves less well at lower ethanol concentrations when stored at room temperature for an extended period. However, the magnitude of the effect varies among species; the concentrations at which the number of COI amplicon copies relative to the standard was significantly decreased compared to 95% ethanol ranged from 90% to as low as 50%. While higher ethanol concentrations positively affect long-term DNA preservation, there is a clear trade-off between preserving insects for morphological examination and genetic analysis. The optimal ethanol concentration for the latter is detrimental for the former, and vice versa. These trade-offs need to be considered in large insect biodiversity surveys and other projects aiming to combine molecular work with traditional morphology-based characterization of collected specimens.

摘要

传统上,为科学目的收集的昆虫被干燥并固定,或保存在70%的乙醇中。这两种方法都能很好地保存具有分类学信息的外骨骼结构,但对于为分子生物学保存DNA来说并非最佳选择。作为DNA防腐剂首选的高浓度乙醇(95 - 100%),通常被认为会使标本变脆且容易断裂。然而,缺乏关于乙醇浓度与标本保存之间相关性的系统研究。在这里,我们测试了防腐剂乙醇浓度与不同样本处理方式相结合如何影响代表四个目、硬化程度差异很大的七种昆虫的完整性。在保存和处理(各种程度的扰动)后,我们统计了每个标本丢失的附肢(腿、翅膀、触角或头部)数量。此外,我们通过比较PCR扩增子拷贝数与添加的人工标准的比率,评估了长期储存后DNA的保存情况。我们发现高乙醇浓度确实会使昆虫变脆。然而,这种影响的程度和性质在不同物种之间有显著差异。一般来说,乙醇浓度达到或高于90%会使昆虫更脆,但对于外骨骼强壮、较厚的物种,这并没有转化为附肢丢失的增加。在乙醇中浸泡后冷冻样本或干燥昆虫对附肢的保留都没有负面影响。然而,如果让昆虫干燥,其形态会受到严重破坏。我们还发现,在室温下长时间储存时,较低乙醇浓度下DNA的保存效果较差。然而,这种影响的程度因物种而异;与95%乙醇相比,COI扩增子拷贝数相对于标准显著减少时的乙醇浓度范围从90%到低至50%。虽然较高的乙醇浓度对DNA的长期保存有积极影响,但在为形态学检查和遗传分析保存昆虫之间存在明显的权衡。对于后者而言的最佳乙醇浓度对前者是有害的,反之亦然。在大型昆虫生物多样性调查和其他旨在将分子工作与基于传统形态学的采集标本特征相结合的项目中,需要考虑这些权衡。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a01/7883690/f1a7ef897b23/peerj-09-10799-g001.jpg

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