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从昆虫视角看生物多样性:基因组研究方法选择与实验设计的十条简单规则

Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies.

作者信息

Matos-Maraví Pável, Duarte Ritter Camila, Barnes Christopher J, Nielsen Martin, Olsson Urban, Wahlberg Niklas, Marquina Daniel, Sääksjärvi Ilari, Antonelli Alexandre

机构信息

Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden.

Gothenburg Global Biodiversity Centre, Gothenburg, Sweden.

出版信息

PeerJ. 2019 Apr 30;7:e6727. doi: 10.7717/peerj.6727. eCollection 2019.

Abstract

Massively parallel DNA sequencing opens up opportunities for bridging multiple temporal and spatial dimensions in biodiversity research, thanks to its efficiency to recover millions of nucleotide polymorphisms. Here, we identify the current status, discuss the main challenges, and look into future perspectives on biodiversity genomics focusing on insects, which arguably constitute the most diverse and ecologically important group among all animals. We suggest 10 simple rules that provide a succinct step-by-step guide and best-practices to anyone interested in biodiversity research through the study of insect genomics. To this end, we review relevant literature on biodiversity and evolutionary research in the field of entomology. Our compilation is targeted at researchers and students who may not yet be specialists in entomology or molecular biology. We foresee that the genomic revolution and its application to the study of non-model insect lineages will represent a major leap to our understanding of insect diversity.

摘要

大规模平行DNA测序为生物多样性研究跨越多个时间和空间维度提供了机遇,这得益于其恢复数百万个核苷酸多态性的效率。在此,我们确定当前现状,讨论主要挑战,并展望以昆虫为重点的生物多样性基因组学的未来前景,昆虫可以说是所有动物中最多样化且在生态上最重要的类群。我们提出10条简单规则,为任何通过昆虫基因组学研究对生物多样性研究感兴趣的人提供一份简洁的逐步指南和最佳实践方法。为此,我们回顾了昆虫学领域中生物多样性和进化研究的相关文献。我们的汇编针对的是可能尚未成为昆虫学或分子生物学专家的研究人员和学生。我们预计基因组革命及其在非模式昆虫谱系研究中的应用将是我们对昆虫多样性理解的重大飞跃。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5305/6499058/7a05225d5980/peerj-07-6727-g001.jpg

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