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Exploring the mechanisms underlying the therapeutic effect of Salvia miltiorrhiza in diabetic nephropathy using network pharmacology and molecular docking.

作者信息

Zhang Lili, Han Lin, Wang Xinmiao, Wei Yu, Zheng Jinghui, Zhao Linhua, Tong Xiaolin

机构信息

Department of Endocrinology, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Beijing 100053, China.

Graduate College, Beijing University of Traditional Chinese Medicine, Beijing 100029, China.

出版信息

Biosci Rep. 2021 Jun 25;41(6). doi: 10.1042/BSR20203520.


DOI:10.1042/BSR20203520
PMID:33634308
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8209169/
Abstract

The mechanisms underlying the therapeutic effect of Salvia miltiorrhiza (SM) on diabetic nephropathy (DN) were examined using a systematic network pharmacology approach and molecular docking. The Traditional Chinese Medicine Systems Pharmacology (TCMSP) database was used to screen active ingredients of SM. Targets were obtained using the SwissTargetPrediction and TCMSP databases. Proteins related to DN were retrieved from the GeneCards and DisGeNET databases. A protein-protein interaction (PPI) network was constructed using common SM/DN targets in the Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database. The Metascape platform was used for Gene Ontology (GO) function analysis, and the Cytoscape plug-in ClueGO was used for Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. Molecular docking was performed using iGEMDOCK and AutoDock Vina software. Pymol and LigPlos were used for network mapping. Sixty-six active ingredients and 189 targets of SM were found. Sixty-four targets overlapped with DN-related proteins. The PPI network revealed that AKT serine/threonine kinase 1 (AKT1), VEGFA, interleukin 6 (IL6), TNF, mitogen-activated protein kinase 1 (MAPK1), tumor protein p53 (TP53), epidermal growth factor receptor (EGFR), signal transducer and activator of transcription 3 (STAT3), mitogen-activated protein kinase 14 (MAPK14), and JUN were the ten most relevant targets. GO and KEGG analyses revealed that the common targets of DN and SM were mainly involved in advanced glycation end-products, oxidative stress, inflammatory response, and immune regulation. Molecular docking revealed that potential DN-related targets, including tumor necrosis factor (TNF), NOS2, and AKT1, more stably bound with salvianolic acid B than with tanshinone IIA. In conclusion, the present study revealed the active components and potential molecular therapeutic mechanisms of SM in DN and provides a reference for the wide application of SM in clinically managing DN.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/7335962d632a/bsr-41-bsr20203520-g8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/cf4fd95c8dd0/bsr-41-bsr20203520-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/603ec3bcf966/bsr-41-bsr20203520-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/62c4fce39572/bsr-41-bsr20203520-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/083dab6ec5ea/bsr-41-bsr20203520-g4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/c66ad471a6b9/bsr-41-bsr20203520-g5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/1c9c1d19295a/bsr-41-bsr20203520-g6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/c352b0cc3fdc/bsr-41-bsr20203520-g7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/7335962d632a/bsr-41-bsr20203520-g8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/cf4fd95c8dd0/bsr-41-bsr20203520-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/603ec3bcf966/bsr-41-bsr20203520-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/62c4fce39572/bsr-41-bsr20203520-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/083dab6ec5ea/bsr-41-bsr20203520-g4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/c66ad471a6b9/bsr-41-bsr20203520-g5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/1c9c1d19295a/bsr-41-bsr20203520-g6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/c352b0cc3fdc/bsr-41-bsr20203520-g7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb1/8209169/7335962d632a/bsr-41-bsr20203520-g8.jpg

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Sci Rep. 2025-8-21

[2]
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[3]
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[4]
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[5]
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[6]
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Am J Clin Exp Urol. 2025-2-15

[7]
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[8]
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[9]
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[10]
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本文引用的文献

[1]
Research Progress on the Pathological Mechanisms of Podocytes in Diabetic Nephropathy.

J Diabetes Res. 2020

[2]
Hepatitis B Core Antigen Impairs the Polarization While Promoting the Production of Inflammatory Cytokines of M2 Macrophages via the TLR2 Pathway.

Front Immunol. 2020

[3]
Systems pharmacology reveals the mechanism of activity of Ge-Gen-Qin-Lian decoction against LPS-induced acute lung injury: A novel strategy for exploring active components and effective mechanism of TCM formulae.

Pharmacol Res. 2020-6

[4]
Pharmacological Mechanisms Underlying the Neuroprotective Effects of Miq. on Alzheimer's Disease.

Int J Mol Sci. 2020-3-18

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Discovery of the Anti-Tumor Mechanism of Calycosin Against Colorectal Cancer by Using System Pharmacology Approach.

Med Sci Monit. 2019-7-28

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Role of Vitamin D Status in Diabetic Patients with Renal Disease.

Medicina (Kaunas). 2019-6-13

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Salvianolic Acid B Attenuates Apoptosis of HUVEC Cells Treated with High Glucose or High Fat via Sirt1 Activation.

Evid Based Complement Alternat Med. 2019-4-21

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Metascape provides a biologist-oriented resource for the analysis of systems-level datasets.

Nat Commun. 2019-4-3

[9]
Protective effect of salvianolic acid B against oxidative injury associated with cystine stone formation.

Urolithiasis. 2019-2-18

[10]
Salvianolic acid B inhibits the development of diabetic peripheral neuropathy by suppressing autophagy and apoptosis.

J Pharm Pharmacol. 2018-12-7

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