Suppr超能文献

分析基本氨基酸溶液中胰岛素稳定性的驱动力:从水合动力学角度看。

Analyzing the driving forces of insulin stability in the basic amino acid solutions: A perspective from hydration dynamics.

机构信息

Molecular Simulation Laboratory, Department of Chemistry, National Institute of Technology, Rourkela 769008, India.

出版信息

J Chem Phys. 2021 Feb 28;154(8):084901. doi: 10.1063/5.0038305.

Abstract

Amino acids having basic side chains, as additives, are known to increase the stability of native-folded state of proteins, but their relative efficiency and the molecular mechanism are still controversial and obscure as well. In the present work, extensive atomistic molecular dynamics simulations were performed to investigate the hydration properties of aqueous solutions of concentrated arginine, histidine, and lysine and their comparative efficiency on regulating the conformational stability of the insulin monomer. We identified that in the aqueous solutions of the free amino acids, the nonuniform relaxation of amino acid-water hydrogen bonds was due to the entrapment of water molecules within the amino acid clusters formed in solutions. Insulin, when tested with these solutions, was found to show rigid conformations, relative to that in pure water. We observed that while the salt bridges formed by the lysine as an additive contributed more toward the direct interactions with insulin, the cation-π was more prominent for the insulin-arginine interactions. Importantly, it was observed that the preferentially more excluded arginine, compared to histidine and lysine from the insulin surface, enriches the hydration layer of the protein. Our study reveals that the loss of configurational entropy of insulin in arginine solution, as compared to that in pure water, is more as compared to the entropy loss in the other two amino acid solutions, which, moreover, was found to be due to the presence of motionally bound less entropic hydration water of insulin in arginine solution than in histidine or lysine solution.

摘要

具有碱性侧链的氨基酸,作为添加剂,已知可以提高蛋白质天然折叠状态的稳定性,但它们的相对效率和分子机制仍然存在争议和不清楚。在本工作中,我们进行了广泛的原子分子动力学模拟,以研究高浓度精氨酸、组氨酸和赖氨酸在水溶液中的水合性质及其对调节胰岛素单体构象稳定性的相对效率。我们发现,在游离氨基酸的水溶液中,氨基酸-水氢键的非均匀弛豫是由于水分子被困在溶液中形成的氨基酸簇内。当用这些溶液测试胰岛素时,发现它与在纯水中相比呈现刚性构象。我们观察到,作为添加剂的赖氨酸形成的盐桥对胰岛素的直接相互作用贡献更大,而对于胰岛素-精氨酸相互作用,阳离子-π 更为突出。重要的是,我们观察到与组氨酸和赖氨酸相比,精氨酸从胰岛素表面优先被排斥,从而丰富了蛋白质的水合层。我们的研究表明,与在纯水中相比,胰岛素在精氨酸溶液中的构象熵损失更大,这是由于在精氨酸溶液中,胰岛素的运动结合的熵含量较低的水合水比在组氨酸或赖氨酸溶液中更多,这导致了这种情况。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验