Gazi Rabiul, Maity Sankar, Jana Madhurima
Molecular Simulation Laboratory, Department of Chemistry, National Institute of Technology, Rourkela769008, India.
ACS Omega. 2023 Jan 12;8(3):2832-2843. doi: 10.1021/acsomega.2c08009. eCollection 2023 Jan 24.
The importance of solvent in stabilizing protein structures has long been recognized. Water is the common solvent for proteins, and hydration is elemental in governing protein stability, flexibility, and function through various interactions. The addition of small organic molecules known as cosolvents may deploy stabilization (folding) or destabilization (unfolding) effects on native protein conformations. Despite exhaustive literature, the molecular mechanism by which cosolvents regulate protein conformations and dynamics is controversial. Specifically, the cosolvent behavior has been unpredictable with the nature and concentrations that lead to protein stabilizing/destabilizing effects as it changes in water content near the vicinity of proteins. With the massive development of computational resources, advancement of computational methods, and the availability of numerous experimental techniques, various theoretical and computational studies of proteins in a mixture of solvents have been instigated. The growing interest in such studies has been to unravel the underlying mechanism of protein folding and cosolvent/solvent-protein interactions that have significant implications in biomedical and biotechnological applications. In this mini-review, apart from the brief overview of important theories and force-field model-based cosolvent effects on proteins, we present the current state of knowledge and recent advances in the field to describe cosolvent-guided conformational features of proteins and hydration dynamics from computational approaches. The mini-review further explains the mechanistic details of protein stability in various popularly used cosolvents, including limitations of present studies and future outlooks. The counteracting effects of cosolvent on the proteins in the mixture of stabilizing and destabilizing cosolvents are also presented and discussed.
溶剂在稳定蛋白质结构中的重要性早已得到认可。水是蛋白质的常见溶剂,通过各种相互作用,水合作用在决定蛋白质的稳定性、灵活性和功能方面至关重要。添加被称为共溶剂的小分子可能会对天然蛋白质构象产生稳定(折叠)或去稳定(展开)作用。尽管有大量文献,但共溶剂调节蛋白质构象和动力学的分子机制仍存在争议。具体而言,由于蛋白质附近含水量的变化,共溶剂的行为随导致蛋白质稳定/去稳定作用的性质和浓度而变得不可预测。随着计算资源的大量发展、计算方法的进步以及众多实验技术的可得性,已经开展了各种关于蛋白质在混合溶剂中的理论和计算研究。对此类研究日益增长的兴趣在于揭示蛋白质折叠以及共溶剂/溶剂 - 蛋白质相互作用的潜在机制,这些机制在生物医学和生物技术应用中具有重要意义。在本综述中,除了简要概述基于重要理论和力场模型的共溶剂对蛋白质的影响外,我们还介绍了该领域的当前知识状态和最新进展,以描述从计算方法得出的共溶剂引导的蛋白质构象特征和水合动力学。本综述进一步解释了在各种常用共溶剂中蛋白质稳定性的机制细节,包括当前研究的局限性和未来展望。还介绍并讨论了共溶剂在稳定和去稳定共溶剂混合物中对蛋白质的抵消作用。